Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01338 ATGGGATTTGATAATCCAAGATCTGAGAGGTTTGAAGATGGTTCTGATGTATCAAAAACTCCATCAACAAATGGTGTTAAGGTGAAATACCACATTGATGGAACACAAATACCAAAACCAAGTTCGAGAAAGGCTCAGAAAAAGGTTACAAGGAACAAGTTTTTGAAAACAAGAGTATTATCGAGAGTATTCTCAGAGGATTACGAAAGAGTGAAAAAGAGAGTATTAGTATTAGATCCTAGGGGACAAATCATTCATCGTTGGAACAAGATATTTCTGATTTTTATGAAGTTTCGTACCGCCTACGTTGCTCCTTCTTCCAAGGTTTTTGGTAGAGGAGAACTTGTTCTTACGTATTCGAAGATTGCTGTTAGGTACTTCAGCAAAGGTTTTTGGTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTGTTGATTTGGATTATTATCCCGACACTTAGGGGTTCGACAATGGCGAACACGAAAAATGTCCTTCGATTTTTCATCATTTTCCAATATATTCCAAGGCTATATTTGATTTTTCCACTCTCGTCGCAAATTGTGAAAGCTACTGGTGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACCTCATGCTTTACATGTTGGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTTTATCGATTGAACGTCAAGAAGCGTGTTGGAGAAGTGTGTGCAATATGGAGAAACCGAATTGTCAATATGGATTCTTTGATTGCCATCGAGTTAAAGATGCGTCGAGGGTCAATTGGTTTATATCTAGTAATGTCACAAATTTATGTTCACCGAGTGCTGGCTTTTATCAGTTTGGTATATATGCTGATGCCATGACTTCTCAAGTTACATCCTCTCCATTCTTCAATAAGTACTTCTTTTGTCTCTGGTGGGGCTTAAGGAATCTCAGTTCTTTAGGACAAGGCCTTCTTACTAGCACTTTTATTGGAGAAATCATGGTGGCCATTGTTGTTGCAACACTTGGATTGGTTCTTTTCGCGTTGTTGATTGGTAATATGCAGACATACCTGCAATCGATAACTGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTTCAGAACTAAGAGAGTCTATTCGGAAATATAATCAATATAAATGGGTGGCTACGCGAGGAGTAGAAGAAGAAGATCTTCTCAAAGGACTTCCACTCGATCTTAGGAGAGACATCAAACGCCACCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTGTTTGATCAAATGGACGAGAGGATGCTAGACGCGATATGCGAAAGACTAAAGCCTGCACTATGCACTCAAGGAACATACCTTGTTCGCGAAGGCGATCCAGTGAACGAAATGCTTTTCATAATTAGAGGCCATCTTGATTCCTACACCACAAATGGAGGCCGAGATGGATTCTTCAACTCATGTCGTATTGGTCCAGGTGATTTCTGTGGCGAAGAGCTCTTAACATGGGCCTTAGATCCAAGACCAAGTGTGATACTCCCTTCATCGACAAGAACGGTTAAAGCTGTCTCGGAAGTAGAAGCGTTCGCGCTCATAGCCGAAGATCTTAAGTTTGTTGCATCTCAATTTAGAAGACTACATAGTAAACAGCTTAGGCATAAATTCAGATTCTATTCACACCAATGGAGAACTTGGGCTGCTTGTTTTGTTCAAGCTGCATGGAGAAGGCACAAGAAAAGGAAAGAAGCTGCTGAATTGAGGGCTAAGGAGAATCTTATGGCAGCTTCGGAGACCGAAAGAGAAACAAAATATGGGACAGGTTTTGTTGTTTATGGAACAAGGGTGGCAAGGAGTACTAGGAAAGGTGTGGTTAGCTCTTTGCAGAAGCCAACAGAACCTGATTTTAGTGATGAATAA 1929 0.4111 MGFDNPRSERFEDGSDVSKTPSTNGVKVKYHIDGTQIPKPSSRKAQKKVTRNKFLKTRVLSRVFSEDYERVKKRVLVLDPRGQIIHRWNKIFLIFMKFRTAYVAPSSKVFGRGELVLTYSKIAVRYFSKGFWLDFIAALPLPQVLIWIIIPTLRGSTMANTKNVLRFFIIFQYIPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCNMEKPNCQYGFFDCHRVKDASRVNWFISSNVTNLCSPSAGFYQFGIYADAMTSQVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTFIGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPSELRESIRKYNQYKWVATRGVEEEDLLKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTQGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRDGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAVSEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRHKKRKEAAELRAKENLMAASETERETKYGTGFVVYGTRVARSTRKGVVSSLQKPTEPDFSDE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01338 642 FunFam Cyclic nucleotide-gated ion channel 1 358 422 - -
Vifa1g01338 642 SMART cnmp_10 431 562 IPR000595 -
Vifa1g01338 642 FunFam Cyclic nucleotide-gated ion channel 1 429 547 - -
Vifa1g01338 642 MobiDBLite consensus disorder prediction 622 642 - -
Vifa1g01338 642 ProSiteProfiles cAMP/cGMP binding motif profile. 431 516 IPR000595 -
Vifa1g01338 642 ProSiteProfiles IQ motif profile. 567 595 IPR000048 GO:0005515
Vifa1g01338 642 Gene3D Jelly Rolls 429 549 IPR014710 -
Vifa1g01338 642 Gene3D Helix hairpin bin 359 422 - -
Vifa1g01338 642 CDD CAP_ED 431 562 IPR000595 -
Vifa1g01338 642 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 94 639 - -
Vifa1g01338 642 Gene3D - 90 357 - -
Vifa1g01338 642 PRINTS EAG/ELK/ERG potassium channel family signature 211 221 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01338 642 PRINTS EAG/ELK/ERG potassium channel family signature 344 353 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01338 642 PRINTS EAG/ELK/ERG potassium channel family signature 94 103 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01338 642 PRINTS EAG/ELK/ERG potassium channel family signature 394 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01338 642 PRINTS EAG/ELK/ERG potassium channel family signature 300 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g01338 642 SUPERFAMILY cAMP-binding domain-like 361 557 IPR018490 -
Vifa1g01338 642 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g01338 642 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g01338 642 Pfam Cyclic nucleotide-binding domain 454 541 IPR000595 -
Vifa1g01338 642 Pfam Ion transport protein 92 358 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g01338 642 SUPERFAMILY Voltage-gated potassium channels 94 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01338 Vifa-Chr1 216979762 216982522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01338 49 642 Ion Channels AT2G28260 69.207 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01338 K05391 - gmx:100786868 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01338 1 216979762 216982522 Vifa1g01338 1 216979762 216982522 ECH