Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01336 ATGGCAGCAGCATTAGAGTGCTGGCCAACCCGCACCACCAACGACGACACAGCTGAACAACAACAAGTCCTCATGAGAACACACCATAGATCCGAACTTGCTTCCACCACTTCTTCTTCTTCTTCTTCTTCCACTCCTTCCAATTCAAAAGACTCCTCCACTCTCATCCATAAGAACAAGTTTCACAAATTCAGTCGAAATCTCTCTGATGCTATTGCATCTTTCAAAAACACTCTCAACCTCAACAACAACAACAACAAGCCTGAGTCTCCTCCTTCTTCTAAGAAACTTGCTCAGGCCTCTGTTCTTCGTAATCTTACTCAACTCTACCCTGGAACTCAACTCCCTGATAATCTCATATCTACCATCCGTAACCATTACCATTCTCTCCCTCTCAGTTATGCACAAGCTGAATTTGATATGAAGGATGTGTTTCTTCACATCAAGCTGATAGAGCAGACATTGGAAAGTGATCAGCCTGAGATTGTGATTCAACAAGAGCGCGGTGGTGGTAGTGGTGAGGTTCAGGTTCAAGGGTTGGCATTGAAGCTCAGTTTTGCTTGCAATGCACTCATTTCGTGGCCGGCTATGTCGGCTGCGTTGGATAGTTTCTCTGTTTGTAGCAAGAGGGCACAAATATTTGAGAAGAAAGGTTTCACCTTAGGGGTTGTTCTTGTTGTTGTTAGGTCCGGGCACGAAAAGTTGGTCAGGGCCCAAGTTGAGAATGCTTTGAAGTTTTCTTTAAAGAAGGCTAAAACCGGTGCTGTGAATGTGAAGCTTCCGTTTGGACTTTGTGGGTGTCAGGAAGAGAGTTTCAAGGGGAGAGAATTAGGGGAGATTGGAGAAGATAGTGGTAGCGGAAAGGAGTTTGAGAATTCTAGCCAAAAGATTCAGCTTCAGATGCCTTTACCTAAGTCGTCTTTCGTTATATCCGTAGATGAATGGCAGACGATAAAGTCGGGTGGGGGTGAGATTGAGAAATGGTTGTTGAATGCAGATAATGTCGAGTTTACAGAACAGATTCGACATAATTCTTATAAGGGAGTCTACATGGGGAAAAGGGTCGGAATCGAGAAGCTGAAAGGGTGTGAAAAAGGAAGTTCTTACGAGTTTGAGCTCCACAAAGATCTTCTGGAACTGATGACTTGTGGACATAGAAACGTTCTACAGTTCTGCGGTATTTGTGTGGATGATAATCATGGGTTATGCGTGGTGACAAAGTTCATGGTTGGTGGATCCGTTCACGACTTAATGTTAAAGAACAAGAAGCTTTTCAGTAAGGATATTGTTAGAATCGCGGTTGATGTAGCTGAGGGGATCAAGTTTATGAATGATCACGGCGTTGCTTTCCGAGACCTTAATACACAGAGGATTCTATTAGACAGACATGGGAATGCTTGCTTGGGAGACATGGGTGTAGTCACTGCCTGCAAGAGTGTTGGAGAAGCAACGGAGTATGAAACTGATGGTTATCGGTGGCTAGCTCCCGAGATAATTGCAGGAGACCCCGAGAGCGTGACAGAGACATCGATGAGCAATGTTTATAGTTATGGAATGATAATTTGGGAGATGGTAACAGGCGAGGCAGCATATTCTGCACTTTCTCCTGTGCAGGCAGCAGTTGGCATTGCTGCATGTGGTCTTAGACCTGAAATTCCAAAGGACTGCCAACCAAATCTAAAATACATTATGACAAAGTGCTGGAACAACACGCCTTCCAAACGTCCTCGATTCTCTGATATTTTAGCTATATTGCTGCAACCATGCAACAATAATAGAGCATTTATTGAACCTAGTCCGTTGATATAA 1809 0.4395 MAAALECWPTRTTNDDTAEQQQVLMRTHHRSELASTTSSSSSSSTPSNSKDSSTLIHKNKFHKFSRNLSDAIASFKNTLNLNNNNNKPESPPSSKKLAQASVLRNLTQLYPGTQLPDNLISTIRNHYHSLPLSYAQAEFDMKDVFLHIKLIEQTLESDQPEIVIQQERGGGSGEVQVQGLALKLSFACNALISWPAMSAALDSFSVCSKRAQIFEKKGFTLGVVLVVVRSGHEKLVRAQVENALKFSLKKAKTGAVNVKLPFGLCGCQEESFKGRELGEIGEDSGSGKEFENSSQKIQLQMPLPKSSFVISVDEWQTIKSGGGEIEKWLLNADNVEFTEQIRHNSYKGVYMGKRVGIEKLKGCEKGSSYEFELHKDLLELMTCGHRNVLQFCGICVDDNHGLCVVTKFMVGGSVHDLMLKNKKLFSKDIVRIAVDVAEGIKFMNDHGVAFRDLNTQRILLDRHGNACLGDMGVVTACKSVGEATEYETDGYRWLAPEIIAGDPESVTETSMSNVYSYGMIIWEMVTGEAAYSALSPVQAAVGIAACGLRPEIPKDCQPNLKYIMTKCWNNTPSKRPRFSDILAILLQPCNNNRAFIEPSPLI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01336 602 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 586 - -
Vifa1g01336 602 Pfam Protein tyrosine and serine/threonine kinase 369 584 IPR001245 GO:0004672|GO:0006468
Vifa1g01336 602 MobiDBLite consensus disorder prediction 28 54 - -
Vifa1g01336 602 SUPERFAMILY Protein kinase-like (PK-like) 322 585 IPR011009 -
Vifa1g01336 602 ProSiteProfiles Protein kinase domain profile. 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01336 602 Gene3D Transferase(Phosphotransferase) domain 1 328 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01336 Vifa-Chr1 216424970 216427031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01336 326 587 MAP Kinase Kinase Kinase AT2G17700 33.708 2.04e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Vifa1g01336 PK_Tyr_Ser-Thr 5.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01336 - - pvu:PHAVU_008G258400g 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01336 1 216424970 216427031 Vifa1g01336 1 216424970 216427031 ECH