Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01332 ATGCTAACTGGATTAATGGACAATCATTGGAAGGCTTGCACTGATTGGGTTAACCCTAATGGAAAACCTAATCTCCAATTTTTCTCCACTCATTTTGGTTCCTCCAAAGTTCAGGTTGATAAATTGTTACTTCTAATTACACTCAAACTTTGTAAGATTGAGATTCCTTTAACTCGTTTGCACCATAATTGTGAAATGGTTCTTTGCGAAGATGGGACTGAAGCATTAGTCGAAGTTTGTATTGTAGATCACAATTTAGAGGTCAAATTACACGAACTTGTTAAACCGGAGAAAGCAATCAAAGATTACAGAACAGAGATTACTGGTGTCTCTTCTAAAGATCTAGAGACCGTGACTCGCTCCTTAGCTGATATACAAAAATTGATGAAGAAGTGGTTATCCAGTGGAGCCATATTAGTGGGACACAGTTTGTATAATGATCTACGCGTGCTGAAGCTATATTATGATAGAGTGGTCGACACTGCATACATCTTCCAACCCATGGATGGAGCTACTCACAGGAGACCTTCTTTAAATAGTTTGTGTCAGGCAAAGTGCAAAGAGGTGAAGAAAGAATTTCAGTGGCTTTCTTTTTTGATTGGCGATTTTGACAAGCTTTTGGTTAAGGTATCACCGTTCTGGTTATGTTTGGCATCAGTTTTGTTGAAGTTGCCGATATGGAAAGAAATTAAGACTTGA 699 0.382 MLTGLMDNHWKACTDWVNPNGKPNLQFFSTHFGSSKVQVDKLLLLITLKLCKIEIPLTRLHHNCEMVLCEDGTEALVEVCIVDHNLEVKLHELVKPEKAIKDYRTEITGVSSKDLETVTRSLADIQKLMKKWLSSGAILVGHSLYNDLRVLKLYYDRVVDTAYIFQPMDGATHRRPSLNSLCQAKCKEVKKEFQWLSFLIGDFDKLLVKVSPFWLCLASVLLKLPIWKEIKT 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01332 232 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 64 184 IPR047021 GO:0004527
Vifa1g01332 232 SUPERFAMILY Ribonuclease H-like 62 185 IPR012337 -
Vifa1g01332 232 SMART exoiiiendus 58 229 IPR013520 -
Vifa1g01332 232 Gene3D - 62 194 IPR036397 GO:0003676
Vifa1g01332 232 Pfam Exonuclease 64 165 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01332 Vifa-Chr1 215613095 215615737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01332 63 184 C2H2 Transcription Factor Family AT5G40310 32.374 1.44e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01332 K14570 - gmx:100785565 194.897