Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01331 ATGAACTCATCATCAGTTAGGGAAACAAGTTATATTAATACTAGCAACTTCATTAGTCGCAAAACTTCTTTTGTGCCAGAAACAAAAGGGGTTATAAATTCTCCTATTAGTTATATTACAAGATGCTTTCAAAAAGCATCTATTTTGCTTGGGAGTCAAAGAGAAACTTTTCATGGAAACATTATTCAATTCTCGTTTGCTGAACTGGAAAATGCCACTGAAAACTTTTCAGCTTCCAATCTTATTGGATTAGGTGGAAGTAGTTATGTATACCGTGGTCAACTGAAAAATGGTAGTAATGTGGCAGTCAAGCGACTTAAAGTTCAAGGAGGACCTGAAGCAGACACTGAGTTTTTCACTGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTGATTGGATACTGCTCAGAATTAAAAGGAAAAAATGTTCAGAGATTACTAGTGTTTGACTACATGAGTAACGGAAATTTGAGGGACCGTTTAGATGGAATTTTCGGAAAAAATATGGATTGGTCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAGGCGGCTGCTCCAAGAATTCTCCACAGAGATGTCAAATCAACAAACATTCTTCTCGATAAAAACTGGCAAGCAAAAATAACTGATCTTGGTCTGGCTAAAGACTTGAGATCTGATGACCTCCGTAGCTGTTCAGATTCTTCGGAAAGAATGAAAGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTGTCGGGAGAGCCTCTATTGAATCTGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCACTGGTCGCCAACCAATCCTTAGATCTGCAGGCAAAGAAGAAAGCCTTGTTGTATGGGCTACTCCTCGCTTACGGGATAGTAGACGAGTAATGACAGAGTTGGCTGATCCACAATTGAAAGGAAACTTCCCAGAAGATGAAGTGCATATAATGGCAAACCTAGCAAAGGAATGCTTACTGTTGGATCCTGATAATAGACCAACTATGAGTGAAGTTGTTCTAATTCTATCAAGCATTTCCCGAACCAGATCTAGAAGAAGAAGATACATTCAATTGTGCCTTTTTCAGGAACCAGAGGATGCAGAGAAGACAAGACAAGCTTCATGGAGAAGATTTCCACCTCATAATTCATTGCCACGTGGTACTGACTACAATCCCCGTGTTGAAAACGAAGATAAAAGTGTAGATACAATTTCAACAGAGTATATGAAGAGTTTGATCCTCTTGACTTCAAAAGGTGAGAGTTGGCATGCATCAGACGAAGACATGGTAGACCTGTCGGAGCCTCGGTTGGAATCATTTTCCATGACAAACATCAATTTCCCTTGA 1386 0.3975 MNSSSVRETSYINTSNFISRKTSFVPETKGVINSPISYITRCFQKASILLGSQRETFHGNIIQFSFAELENATENFSASNLIGLGGSSYVYRGQLKNGSNVAVKRLKVQGGPEADTEFFTEIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMSNGNLRDRLDGIFGKNMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGLAKDLRSDDLRSCSDSSERMKGTFGYFAPEYAIVGRASIESDVFSFGVVLLELITGRQPILRSAGKEESLVVWATPRLRDSRRVMTELADPQLKGNFPEDEVHIMANLAKECLLLDPDNRPTMSEVVLILSSISRTRSRRRRYIQLCLFQEPEDAEKTRQASWRRFPPHNSLPRGTDYNPRVENEDKSVDTISTEYMKSLILLTSKGESWHASDEDMVDLSEPRLESFSMTNINFP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01331 461 SMART serkin_6 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01331 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vifa1g01331 461 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Vifa1g01331 461 Gene3D Phosphorylase Kinase; domain 1 48 156 - -
Vifa1g01331 461 CDD STKc_IRAK 82 355 - -
Vifa1g01331 461 FunFam receptor-like serine/threonine-protein kinase NCRK 50 156 - -
Vifa1g01331 461 FunFam receptor-like serine/threonine-protein kinase NCRK 157 367 - -
Vifa1g01331 461 MobiDBLite consensus disorder prediction 384 408 - -
Vifa1g01331 461 Pfam Protein tyrosine and serine/threonine kinase 80 353 IPR001245 GO:0004672|GO:0006468
Vifa1g01331 461 PANTHER OS01G0750732 PROTEIN 46 374 - -
Vifa1g01331 461 Gene3D Transferase(Phosphotransferase) domain 1 157 374 - -
Vifa1g01331 461 ProSiteProfiles Protein kinase domain profile. 76 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01331 461 SUPERFAMILY Protein kinase-like (PK-like) 57 355 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01331 Vifa-Chr1 215490602 215492785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01331 4 458 Receptor kinase-like Gene Family AT2G28250 54.466 2.35e-156 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vifa1g01331 PK_Tyr_Ser-Thr 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01331 - - gmx:100499641 704.131