Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01324 ATGCAGGATCTTGTTCAAGTTAGAAGCTTTAGAAATGGTTATTATAACCATGAGGAACCTGTTGTTGTTTATTCTTCATCAGAAAACCCTAACTTCTTTACTATGAATTCTTTGGAGTATCAGGAACAACTTGGTGCAAGTGCAGAAGAATCAAGTAGGTTTTTAATGATGCAACAACTTCATCATCATCATCAACAGCAGCAGCAGCACTATGGTTCATGTGCTAATTCTTTGACTGATTTTCATTCTCCTGAACAAAAGCAAGTGAGTGATTTAGGCAATTGGAGAAACAGTACTGTTCAAGTTCAACATCAAGTCACTGATAGGTTTTCAAATAATGCAACAAACTCTCTCCCATGTGTTTATGGCGGCGATAAGCAATTAGGTCAAGTCATGCATCATACTCCTACTTCTTCACCACTGTTTCAGAATCATTCTTTGCAAGATATAGTCAAGTCCATCACTTCCAATGCCTCAGATTCTCACATGACATCACTCATGCATCATAATAATGGTCAAGAGATTTGTGGAGTGAATGCTTCTGAACTTCAACATCAACCAAATCAGATGGAGTTCGGATGGAAAAATCCAACAGATTCAAATCCACAAAGCTTATCATTATCACTTTCATCTAAGGCTCATGTTTCTCAGTTTAAAGAGGAGCATCAATATGTCAAACCTTCCTTTGTTTCTAGAGATTGTGGAAAACCACTTCAAGATTTGGTGGTTGGAATAATACCTAATTCAACAAAGACTACTAGTTATGGAAATGTGGGTCCACTTGGCCCTTTCACTGGCTATGCTACTATCCTTAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTATCTGAGGTTTGCTGTCCAAAATCTGTGTCAATATGTGATGTTTCAGAAACTGAAGTTGCATCTATAGAAAGCCATTCATGTTCATCATCATCATCTATGTTTCATGGTACGAAAGAAAATAGAACTGATTGGGGATCTAGAAGTAGTTTTGGTGTTTCTTTGCAGCCAGATTATCAACAAAATAAAGCAAAACTTGTGTACATGCAAGAAGAGGTCAACAGGAGATACACGCAGTACCAACACCAAATGCAAATGGTATTTTCATCTTTTGAATCAGTAGCGGGTCTTAATTCAGCTACTCCTTACATCACCTTGGCTTTGAAGTTAGTATCAAAACACTTCAAGTGCCTAAACAATTCTATTTCAAATCAGCTCAAGCTTATAAATGAAGTCATACAGAATGATTCTTCCATGGCCACCACAAACAATAGTACTCACCTTGTTGACACTAATAATGTAGCAAGTGTAAGGTGCATGGACCAAAGCATACAAAAGAACAAATTCGAAAAGGCTCTATCAGGTTTTCATGATCCACAACAACAGCATGTTTGGAGGCCTCAAAGAGGCTTCCCCGAACGTGCTGTCACGATCCTTAGAGCTTGGTTGTTTGAACATTTTCTTCACCCTTATCCTACAGACACTGATAAACACATGTTGGCTATTAAGACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTTATCAATGCTCGAGTTCGTGTGTGGAAACCTATGGTTGAGGAAGTACACATGCTTGACAAAAAAACAAGCAGCACCAATGAGAATTCCAATCGAAATGAAGGAACTTCCAGCACCGAAGGTGGCTCATTCAACCAGCCTAAAATTGATAAAACAGTCAACAGGTTTTTTATGCATTCAATACCTGAAAACCAAATTCAGGATATGGAGTTTAGTTCATCTATAGATAGAAATGCAGATGAAAGTGAGTTGAATGAAGCCGAACAATGGAGACAAGAGAAGCGGTCAAAGATGGAATGTGAAATGAGTTCAAGAATGGATGGAGCAGTGATGGATTTTTTGCCATACAGACATAGTGGACATGATGTTGGAGGATCACTTGGGTCTGTTTCATTGACATTAGGTCTTAGGCATGGTGTTGAAGGTGTGCAACACCAAGAGGTTCAATATAGACATCATCGTCATCACCTTGGAGGGCAAATGATACATGACTTTGTAGGTTGA 2055 0.3835 MQDLVQVRSFRNGYYNHEEPVVVYSSSENPNFFTMNSLEYQEQLGASAEESSRFLMMQQLHHHHQQQQQHYGSCANSLTDFHSPEQKQVSDLGNWRNSTVQVQHQVTDRFSNNATNSLPCVYGGDKQLGQVMHHTPTSSPLFQNHSLQDIVKSITSNASDSHMTSLMHHNNGQEICGVNASELQHQPNQMEFGWKNPTDSNPQSLSLSLSSKAHVSQFKEEHQYVKPSFVSRDCGKPLQDLVVGIIPNSTKTTSYGNVGPLGPFTGYATILKNSRFLKIAQNLLSEVCCPKSVSICDVSETEVASIESHSCSSSSSMFHGTKENRTDWGSRSSFGVSLQPDYQQNKAKLVYMQEEVNRRYTQYQHQMQMVFSSFESVAGLNSATPYITLALKLVSKHFKCLNNSISNQLKLINEVIQNDSSMATTNNSTHLVDTNNVASVRCMDQSIQKNKFEKALSGFHDPQQQHVWRPQRGFPERAVTILRAWLFEHFLHPYPTDTDKHMLAIKTGLSRNQVSNWFINARVRVWKPMVEEVHMLDKKTSSTNENSNRNEGTSSTEGGSFNQPKIDKTVNRFFMHSIPENQIQDMEFSSSIDRNADESELNEAEQWRQEKRSKMECEMSSRMDGAVMDFLPYRHSGHDVGGSLGSVSLTLGLRHGVEGVQHQEVQYRHHRHHLGGQMIHDFVG 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01324 684 ProSiteProfiles 'Homeobox' domain profile. 465 528 IPR001356 GO:0003677
Vifa1g01324 684 SUPERFAMILY Homeodomain-like 469 534 IPR009057 -
Vifa1g01324 684 Pfam Associated with HOX 270 406 IPR006563 -
Vifa1g01324 684 MobiDBLite consensus disorder prediction 537 564 - -
Vifa1g01324 684 Gene3D - 471 533 - -
Vifa1g01324 684 SMART prehox3 265 407 IPR006563 -
Vifa1g01324 684 SMART HOX_1 468 532 IPR001356 GO:0003677
Vifa1g01324 684 FunFam BEL1-like homeodomain protein 9 471 533 - -
Vifa1g01324 684 CDD homeodomain 468 529 IPR001356 GO:0003677
Vifa1g01324 684 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 167 548 - -
Vifa1g01324 684 MobiDBLite consensus disorder prediction 540 564 - -
Vifa1g01324 684 Pfam Homeobox KN domain 485 524 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01324 Vifa-Chr1 214274270 214276718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01324 202 556 Homeobox Transcription Factor Family AT5G02030 44.444 1.71e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa1g01324 POX 2.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01324 - - psat:127083522 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01324 1 214274270 214276718 Vifa1g01324 1 214274270 214276718 ECH
Vifa1g01324 1 214274270 214276718 Vifa4g04874 4 1534993822 1534994982 PCT