Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01315 ATGGCCGAGGCCTTAGTTGGAGTTGTGTTTCAGAATTTGTCATCTCTTCTTCGGGATGAATTTTCCACCTTGTTCGGAATCGAGTCAAAGATGGAAAAGCTATCAAACACCTTAGTTCGCATCAACGCTGTCCTTGAAGATGCTGAGCGGAAACAAGTCACGGACCGGTCTATGAATGAATGGCTGCAACAACTCAAAGATGCTGTATATGTGCTTGATGATATCCTTGATGAATATTCCATTGAATCTACCCGGCTGAGGGGCTCACTTTCTATCAACCCAAAGAACTTAGTTTTTCGTCGTGACATAGGCAACCGGTTGAAAAATATTACAAGGAGATTAGATTATATTGCTGATGGTAAATACAACTTTATTCTACGACATGATATTACTATTACTGATAGCTCAATTGAAGTGCCTGAATGGCGCCAAACCAGCCCTTTTATTGCTGAACGAACAGTTTTTGGACGACAACATGATAACGACAAGATTGTTGAGTTTCTCCTCACCCAACCGACGGATTCTGACTCTCTTTCCATCCTGCCCATTGTTGGCTTAGGCGGTCTTGGAAAAACAACTCTTGCTCAGTTGGTCTACAATGATGTTAGGGTGACTAACAATTTTGATACAAAAATCTGGGTTTGCGTTTCTGAGGTATTTTCCGTCAGGAGGATTCTATGTTCCATTATAGAAGCTATCAAACCTGACAAGTGTGATTCCTTGGATTTAGATGGATTACAAATAAAGGTGCAAGGTTTGTTGCAAGGTAAAAGATATTTTCTAGTTTTAGACGATGTATGGAACAAAACTAAACATTTAGAATCTGGGTTAAGCCAAGAGAAATGGATTAAGTTGAAATCCATGTTGTTGTGTGGATCCAAAGGTTCTTCCATTTTAGTTTCCACTCGAGATGAGTATGTTGCGGAAATTGTGAGAACATGCCAAACCTATCATTTGTCTTGTCTCCCTCAAGATGAATGTTGGTTGTTGTTCAAACAATATGCATTTGGACATGAAGGAGAAGAACGCGCTGAACTGATGGCAATAGGTAAGGAGATAGCAAAGAAATGCGGTGGATTGCCTCTTGCGGCACAAGCATTGGGAAGTGTAATGCGATCAAAGAGTGAAGAAAAAGATTGGCTTGAAGTTAAAGAGAGCAGAATTTGGGATTTAGCACATGACAATTCAATCTTGTCTGTCTTGAGGTTGAGCTACTTTCATTTTAATCGGACCTTAAAGCAATGTTTCTCTTTTTGTGCTATATTTCCCAAAGATTGGATAATCATGAAAGAAGAACTGATTCATCTTTGGTTGGCTAATGGATTTATTTCATCTAGAGAAAATTTGGAGGTCGAAGATGTTGGCAGCATGATCTGGAATGAATTGTGCCAAAAATCATTCTTTCAAGACATCAAGATCGATGAATATTCTGGAGACATATCTTTCAAGATGCATGATCTTGTCCATGATCTTGCTCGGTCAATAATGGGGCAAGATTGTATGATTTTAGGGAATGCTGAAAACATGGCTAATTTGTCTAAAAGTACACATCATGTTAGTTTTCACTTTGCTTCTCATTTATCAGTTGATAAAAGTTCCTTGAAAAAAGTAGAATCCTTACGCACAATGTTTGAGTTGAATCATTATGCTTATGAACACACTGATTACTTCCCAGCAAACTGTTCTCTACGGGTTTTAAGCATCTCCCCTATCCAGGTATCATCACTCGGAAGCTTAATTCATTTGAGGTATTTGAAACTTCATGGTTGCGACATTAAAAACATCCCTGACTCAATTTACAACTTGCATAAACTGGAAGTCTTGAAATTGATAAGTCTTTCCAAACTGACATGTCTACCGAAACGTTTGGCTTGCTTACAAAATCTTAGGCATCTTGTCATTGAAGATTGCTATTCACTTTCTCAATTGTTTCCCTACCTTGGAAAATTAACTTGCCTTAGAACACTAAGTGTATACATCGTTAGTATAGAGAGAGGACAAGGCTTGGCAGAACTACGTGATCTAAACCTCAGAGGAAAGCTAAATATCAAAGGGTTAAAAGATGTTGGTAGTCTATCCCATGCTCAAGATGCCAATTTGACAGCTAAAACAGAACTCCATGAAGTATCCATGTCATGGAGCGTCAATGATAGAATTACTGAGACCCCGAGTTTTAATTCCGAGCAAGTACTAGAAGGGCTTCAACCTCACACAAATCTCAAAAGCTTGAAGATATATTACTATAATGGATTATGTTTCCCAAATTGGATCCAAACTCTAACTAGTTTAGTTTCTCTTGAACTCAAGGGTTGCAACAAGTGTGTGCGGGTTTCACTACTTGGTAAACTACCATCTCTTAAGAAACTGGAACTACACGATATGAATAATGTGAAATTTGTGGATGATGAGGATGAGGAATGTCACGACAATATGGATGTGAAGATTTTCCCATCTCTTGAGGAACTCATATTATTTAGGTTACCAGGATTAGAGAGGTTGTTGAAAATGGAAAGAAGGGAGATGTTTCCTTGTCTTTCTGTTTTAAAAATATCCTTTTGCGATAAACTTAGATTGCCATGTCTTCCTTATGTTAATGACCTACAAGTAGTTGGATGTAACATTGAATTATTGAGTTCAATCTCTAGCTTCGATGGTCTTACTACCCTTAACCTTAGTGAAGGTAGAGGAATAACATCCTTTCCAGAGGGGATGTTCAGAAACCTTACTTGTCTTCAAACTCTAACAGTAAATAAATTTTCGAACTTGAAGGAGTTACTAAATGAACCCTTTAACGTTATCTCTTCCAGCCATGAGCTTAATTGGAAAGGTATGCAATCCCTTCGAACCTTGACAATTACTGATTGTGAAGAATTGAGATGCTTGCCGGAGGGTATTCGATTCCTCACTTCTCTAGAGGATCTGACAATTTATGGTTGCCCAACATTAGAAGAGCTATGCAAGAAGGAAACAGGGGAGGATTGGAACAGGATAGCACATATTCCGAATTTAGATATTTCTTTATGA 3024 0.3829 MAEALVGVVFQNLSSLLRDEFSTLFGIESKMEKLSNTLVRINAVLEDAERKQVTDRSMNEWLQQLKDAVYVLDDILDEYSIESTRLRGSLSINPKNLVFRRDIGNRLKNITRRLDYIADGKYNFILRHDITITDSSIEVPEWRQTSPFIAERTVFGRQHDNDKIVEFLLTQPTDSDSLSILPIVGLGGLGKTTLAQLVYNDVRVTNNFDTKIWVCVSEVFSVRRILCSIIEAIKPDKCDSLDLDGLQIKVQGLLQGKRYFLVLDDVWNKTKHLESGLSQEKWIKLKSMLLCGSKGSSILVSTRDEYVAEIVRTCQTYHLSCLPQDECWLLFKQYAFGHEGEERAELMAIGKEIAKKCGGLPLAAQALGSVMRSKSEEKDWLEVKESRIWDLAHDNSILSVLRLSYFHFNRTLKQCFSFCAIFPKDWIIMKEELIHLWLANGFISSRENLEVEDVGSMIWNELCQKSFFQDIKIDEYSGDISFKMHDLVHDLARSIMGQDCMILGNAENMANLSKSTHHVSFHFASHLSVDKSSLKKVESLRTMFELNHYAYEHTDYFPANCSLRVLSISPIQVSSLGSLIHLRYLKLHGCDIKNIPDSIYNLHKLEVLKLISLSKLTCLPKRLACLQNLRHLVIEDCYSLSQLFPYLGKLTCLRTLSVYIVSIERGQGLAELRDLNLRGKLNIKGLKDVGSLSHAQDANLTAKTELHEVSMSWSVNDRITETPSFNSEQVLEGLQPHTNLKSLKIYYYNGLCFPNWIQTLTSLVSLELKGCNKCVRVSLLGKLPSLKKLELHDMNNVKFVDDEDEECHDNMDVKIFPSLEELILFRLPGLERLLKMERREMFPCLSVLKISFCDKLRLPCLPYVNDLQVVGCNIELLSSISSFDGLTTLNLSEGRGITSFPEGMFRNLTCLQTLTVNKFSNLKELLNEPFNVISSSHELNWKGMQSLRTLTITDCEELRCLPEGIRFLTSLEDLTIYGCPTLEELCKKETGEDWNRIAHIPNLDISL 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01315 1007 SUPERFAMILY L domain-like 469 998 - -
Vifa1g01315 1007 FunFam Probable disease resistance protein At1g63360 405 494 - -
Vifa1g01315 1007 CDD RX-CC_like 2 119 IPR038005 -
Vifa1g01315 1007 Gene3D - 405 495 IPR036388 -
Vifa1g01315 1007 Gene3D Ribonuclease Inhibitor 503 663 IPR032675 -
Vifa1g01315 1007 Gene3D Ribonuclease Inhibitor 664 860 IPR032675 -
Vifa1g01315 1007 Gene3D Ribonuclease Inhibitor 861 993 IPR032675 -
Vifa1g01315 1007 Gene3D - 321 404 IPR042197 -
Vifa1g01315 1007 Gene3D - 143 317 IPR027417 -
Vifa1g01315 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 419 IPR027417 -
Vifa1g01315 1007 Coils Coil 31 51 - -
Vifa1g01315 1007 Gene3D - 5 116 - -
Vifa1g01315 1007 PRINTS Disease resistance protein signature 253 267 - -
Vifa1g01315 1007 PRINTS Disease resistance protein signature 942 958 - -
Vifa1g01315 1007 PRINTS Disease resistance protein signature 180 195 - -
Vifa1g01315 1007 PRINTS Disease resistance protein signature 357 371 - -
Vifa1g01315 1007 Pfam Rx N-terminal domain 6 92 IPR041118 -
Vifa1g01315 1007 Pfam NB-ARC domain 159 385 IPR002182 GO:0043531
Vifa1g01315 1007 PANTHER DISEASE RESISTANCE PROTEIN RP 30 824 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01315 Vifa-Chr1 213271738 213274761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01315 163 713 WRKY Transcription Factor Family AT5G45050 22.026 4.36e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01315 - - mtr:11405813 1230.31