Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01314 ATGTCGCCGGAGTTTCAGTCCAGCGGCGTGGCGACGCAGAAGTCTGATGTGTATGCTTTTGGAGTGGTGATACTGGAGCTTTTATCCGGGGAGGAGCCGTTGAAGTTCAAGTTTGACGAGAAGAGCCGTGATTTTGTGAGGAAATCGGTGATTGAGTCGGCGAGATCCGCCGTGGACGGTGGCGAGGGTGGCGTGGAAGGGAAGCTGAGGATGTGGGTGGATAGGAGGTTGAAAGATTCGTTTCCGGTTGATGTTGCTGAGAAGCTGACACGTGTAGCGTTGGATTGTGTACACGTGGACCCGGATCAAAGGCCTAACATGGGACGCGTCGCAGGGAAGATTTCCACGTTGTATTTGAAGTCTAAGCATTGGTCTGATAACATGAAATTGCCTGATATGTCTTTTTCATTGGCTCCTAGATGA 423 0.5106 MSPEFQSSGVATQKSDVYAFGVVILELLSGEEPLKFKFDEKSRDFVRKSVIESARSAVDGGEGGVEGKLRMWVDRRLKDSFPVDVAEKLTRVALDCVHVDPDQRPNMGRVAGKISTLYLKSKHWSDNMKLPDMSFSLAPR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01314 140 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01314 140 PANTHER OS09G0572100 PROTEIN 1 140 - -
Vifa1g01314 140 SUPERFAMILY Protein kinase-like (PK-like) 1 110 IPR011009 -
Vifa1g01314 140 Gene3D Transferase(Phosphotransferase) domain 1 1 133 - -
Vifa1g01314 140 Pfam Protein tyrosine and serine/threonine kinase 1 111 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01314 Vifa-Chr1 213254635 213255057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01314 1 136 Receptor kinase-like Gene Family AT1G51940 31.387 5.66e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g01314 PK_Tyr_Ser-Thr 1.7e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01314 - - gmx:100792694 230.335