Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01313 ATGTGCAAAACCAAAATGGCCATTAACGCTTCTGCCCCAAAATCAACCCCACGTTCACAACAACAACAACGAACAAACCAAACACCAAAAACAACACCATCGTCATCAAAAACATCTTCAAAAACATCTTCAAAAACATCATCAAAAACATCATCATCAAACCCCACAAAACCCAAAACCCGTTCTTTCTCCGACAACCCATCCACCTCCTACGCCACCACAACCGGTTCAACCGGCTTCCGTCTCTCAACCGACACATCCATCTCTAGCCCAACATCCCTCACTACCCTCCGCAACACCCTCCCAGAAAACCCCAACATCTACGACTTCTCCGAAATCTGTTCCGCCACAAACAACTTCCTCTCCAAACGCTTCTCCTCCTCAACCCCTTGCTGGCACTGCACCCTCCGCGGCGCTGACGTCATCATCTTCCAACGCAAATTCCGACGCAAACTTCAAACCACTCAGCTCCGGGAACTTCTCTCCGTCGTCTGCCGTAGCCACCACGTCAGTATCATCAAACTCCTCGGTGTTTCAATCTCCGGCGAACATATTTACCTCGTGTACGAATTCGTTAACGGCGCTAATCTCTCCGATTGTTTACGTAACACCCGAAACGTTCATTTCACCGTTCTTTCTACATGGATTTCGAGAATGCAAGTCGCCACCGATCTCGCTCATGGACTTGATTACATTCACAACAAGACCGGGTTTGTCATTTCGGCGCAGCGCAACTCTGCGGTGAAGCCGTTGAGGAAAACGAAACCGCCACCAAACAATCGGGGGAAAAAGAAATCACGGAGGAAGCTAAATCGAGTCCATTGA 825 0.4885 MCKTKMAINASAPKSTPRSQQQQRTNQTPKTTPSSSKTSSKTSSKTSSKTSSSNPTKPKTRSFSDNPSTSYATTTGSTGFRLSTDTSISSPTSLTTLRNTLPENPNIYDFSEICSATNNFLSKRFSSSTPCWHCTLRGADVIIFQRKFRRKLQTTQLRELLSVVCRSHHVSIIKLLGVSISGEHIYLVYEFVNGANLSDCLRNTRNVHFTVLSTWISRMQVATDLAHGLDYIHNKTGFVISAQRNSAVKPLRKTKPPPNNRGKKKSRRKLNRVH 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01313 274 SUPERFAMILY Protein kinase-like (PK-like) 148 235 IPR011009 -
Vifa1g01313 274 MobiDBLite consensus disorder prediction 9 92 - -
Vifa1g01313 274 MobiDBLite consensus disorder prediction 247 274 - -
Vifa1g01313 274 Gene3D Transferase(Phosphotransferase) domain 1 133 240 - -
Vifa1g01313 274 ProSiteProfiles Protein kinase domain profile. 69 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01313 274 PANTHER OS09G0572100 PROTEIN 1 238 - -
Vifa1g01313 274 MobiDBLite consensus disorder prediction 256 274 - -
Vifa1g01313 274 MobiDBLite consensus disorder prediction 1 92 - -
Vifa1g01313 274 Pfam Protein tyrosine and serine/threonine kinase 150 236 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01313 Vifa-Chr1 213253696 213254596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01313 108 234 Receptor kinase-like Gene Family AT2G19230 30.769 6.84e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa1g01313 PK_Tyr_Ser-Thr 2.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01313 - - gmx:100792694 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01313 1 213253696 213254596 Vifa1g01313 1 213253696 213254596 ECH