Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01306 ATGGCAGAAGAAGGATCAATCGGGTACAGTTTTAGTGTCTATACAACTCATGGACTCCATTCAAAAAATCGACAACCTAGGCCAAATCCTGTGGCGTCAGATTTCTTCAATTTTCAAGTCACAGCATACCTTCGAGATTTCTCTTCACCAACTCATTTGAGGGTGTCAGTCATGTTTAGAACCTCCATACGTATAAATTGCAACGAACTCTTCATGCACGACCAAAATTTCCTTTGGTTATACTTACACCAATTCTCCTCTCCGTATTTCAACTCTGAAAACCTTTCCCAAATGACACTGAGTCTTATACCTAAGGTCAAACGACTGTTCTTTCCCTTGGATATTCATGAACTTGCGGCACCAGTTTCCGATCATATTATCCAAGAGGTTCCTTTGGTTTTGACTATTATAGTGGAAAAAAGAAGAACAGGTGAAGAGGTGACGATGACGAGAGAACGTGCAGTCATGGAAGAGTCTATGCAATTTGGAAATACAATTCCTGCATCTAATGAAGCCATTTTGTCTCTTAAAGCATACTCACTTCCTAGGAATTGTTGCGTATGCATGGAGAGATTTCATGATGAATTAGAAGAAGGTGGCGATAGTGATAACGCGAAGGTATCAACCATGGTATGCGGTCATATTTTTCATTATGACTGTATTGTGAAGTGGCTCCAAAGGAGTCATGTATGCCCATTGTGCCGTTATGCTATGCCCACTTGA 723 0.4066 MAEEGSIGYSFSVYTTHGLHSKNRQPRPNPVASDFFNFQVTAYLRDFSSPTHLRVSVMFRTSIRINCNELFMHDQNFLWLYLHQFSSPYFNSENLSQMTLSLIPKVKRLFFPLDIHELAAPVSDHIIQEVPLVLTIIVEKRRTGEEVTMTRERAVMEESMQFGNTIPASNEAILSLKAYSLPRNCCVCMERFHDELEEGGDSDNAKVSTMVCGHIFHYDCIVKWLQRSHVCPLCRYAMPT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01306 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 240 IPR013083 -
Vifa1g01306 240 Pfam RING-H2 zinc finger domain 184 235 IPR024766 GO:0008270
Vifa1g01306 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 140 239 - -
Vifa1g01306 240 SMART ring_2 185 234 IPR001841 -
Vifa1g01306 240 ProSiteProfiles Zinc finger RING-type profile. 185 235 IPR001841 -
Vifa1g01306 240 SUPERFAMILY RING/U-box 184 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01306 Vifa-Chr1 212129044 212129766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01306 153 239 C3H Transcription Factor Family AT1G18760 33.333 9.50e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01306 - - psat:127079253 422.165