Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01304 ATGCTGAGCCAGCAGGACTCAGTGAGTCAACTCGCTCAGGACATGTTCTCCCACGAAACCAACAACAACAACATCATCATGCTTGCAGCCATTGTTTCTCTCCTTCTCGTAATCCTCTTCGTCCTCCTTCTACACGTCTACGCCAAATGCTTCCTAGCTCACTCCAACTCACTGTCAATTCCCCGCCGCCGGCAACCTCCGGCGAATGTAAACCTCTCCAACGTTCCAACTCCTTCCAGCTTTTACCGTGATTTCAACATCGAACCCTTTAACGGACTCAACCCAACAACAGTCTCAAAGATTCCGACATTTGTGTCGGAACATAAAACAGAAGAACTAGAATGTATCATATGTTTGAGTTACATTGAAAAGGGAGAGATTGGAAGAAAGTTACCAAAATGTGGACACGCTTTTCATGTTGAATGCATTGACATGTGGTTGAATTCACATAGCAATTGCCCAGTTTGTAGATCTTTGATTGTTGACGATGATTCTCGTGATGCTGGTGTTGAGATTGTGATTGGTAGTCCAACAAGTTATGAGATTAGTGAAAGTGGTTCCGTTTCTGTATCAGAAACTTCTTTGTCTTTGTTTGGGTTTTCTTTCAAGAGAATTATTAGCAAAGTTTTTCTTTCTTCTCATGTAAATCAATTAGATCATGCTTCACAATGA 672 0.4182 MLSQQDSVSQLAQDMFSHETNNNNIIMLAAIVSLLLVILFVLLLHVYAKCFLAHSNSLSIPRRRQPPANVNLSNVPTPSSFYRDFNIEPFNGLNPTTVSKIPTFVSEHKTEELECIICLSYIEKGEIGRKLPKCGHAFHVECIDMWLNSHSNCPVCRSLIVDDDSRDAGVEIVIGSPTSYEISESGSVSVSETSLSLFGFSFKRIISKVFLSSHVNQLDHASQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01304 223 CDD RING-H2_EL5-like 114 157 - -
Vifa1g01304 223 SMART FANCL_C_2 111 164 - -
Vifa1g01304 223 SUPERFAMILY RING/U-box 104 163 - -
Vifa1g01304 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Vifa1g01304 223 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Vifa1g01304 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 167 - -
Vifa1g01304 223 Pfam Ring finger domain 114 157 IPR001841 -
Vifa1g01304 223 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01304 Vifa-Chr1 211843724 211844395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01304 26 160 Rapid Response to Elicitors AT3G16720 39.416 1.00e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01304 - - psat:127118511 315.849