Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01286 ATGTCTTGCTCCGTCGCAGTTTCGAATTCTCCTGTTTTTTCTCCTTCATCGTCTCTCTTCTGTAAACAATCATCAATCATCACGAATTCCGAATCGTTAACATTGTCTCTCTCTCATCTCAAACCGAATAATTCATCATCAACGACTTTGTCTCCTTCTCCGTCTTCATCTCCGTCTTCTCCGTTTTATCTCCGACTACCGAAACTACCCTCGGTTTTCTCATCTTCATCCTCAACAAACTCTACTTCTCAGAACGATGCTGTTTTGAAGAGGAAGCGACCAACGAGACTTGATATACCTGTTTCTTGTTTGGGATTTGGGGCTCCGGCGACACCGTCTGCGGTGGCGCGTGATGTTGTTGAGGCGGAAGGAGATGGGTATTCGGTTTATTGCAAGAGAGGGAGAAGGGAGTATATGGAAGATCGTTACACTGCTGGGGATAAGCTTCGTGGAGAAAGCAATTTGGCTTTTTTTGGGGTGTTTGATGGACATGGAGGTGCGAAAGCTGCGGAATTTGCGGCCAATAACTTGGAAAAGAACATCTTGGATGAGGTTATCAATAGTGAAGAAGAAGATGTTGAGGAGGCAGTGAAGCGCGGTTACCTCAATACTGATTCTGAGTTCCTGAAACAAGATCTCCATGGCGGTTCTTGTGTTGTAACAGCATTGATTAGGAATGGTAACTTAGTTGTATCTAACGCTGGTGATTGCCGTGCTGTCATTAGTAGAGGAGGGGTTGCAGAGGCCTTAACATCTGATCATCGACCTTCGAGGGAAGATGAACGGGATAGAATTGAGACCTCGGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGCGGATTCAAGGATCTCTGGCTGTATCTAGGGCTATTGGAGACCGACACCTGAAACAATGGGTGACTGCGGAGCCTGAGACTAAAGTTATCAGCATTGAACCTGAACATGACTTGTTAATATTAGCATCAGACGGCTTATGGGATAAGGTTAGTAATCAAGAAGCAGTAGACATTGCTCGTCAATTTTGCGTAGGAAACAACAAACAACAACCATTGCTGGCATGTGAAAAGCTTGCAGCGTTGTCTGCTTCGCGAGGCTCGCAGGATGATACAAGTGTTATGCTAATCAAATTGAAACATTATACTTAG 1146 0.4485 MSCSVAVSNSPVFSPSSSLFCKQSSIITNSESLTLSLSHLKPNNSSSTTLSPSPSSSPSSPFYLRLPKLPSVFSSSSSTNSTSQNDAVLKRKRPTRLDIPVSCLGFGAPATPSAVARDVVEAEGDGYSVYCKRGRREYMEDRYTAGDKLRGESNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVINSEEEDVEEAVKRGYLNTDSEFLKQDLHGGSCVVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIETSGGYVDLCRGVWRIQGSLAVSRAIGDRHLKQWVTAEPETKVISIEPEHDLLILASDGLWDKVSNQEAVDIARQFCVGNNKQQPLLACEKLAALSASRGSQDDTSVMLIKLKHYT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01286 381 Gene3D - 126 381 IPR036457 -
Vifa1g01286 381 SMART PP2C_SIG_2 141 377 IPR001932 -
Vifa1g01286 381 ProSitePatterns PPM-type phosphatase domain signature. 157 165 IPR000222 GO:0043169
Vifa1g01286 381 ProSiteProfiles PPM-type phosphatase domain profile. 126 377 IPR001932 -
Vifa1g01286 381 SUPERFAMILY PP2C-like 127 379 IPR036457 -
Vifa1g01286 381 Coils Coil 179 199 - -
Vifa1g01286 381 CDD PP2Cc 126 377 IPR001932 -
Vifa1g01286 381 FunFam probable protein phosphatase 2C 25 119 380 - -
Vifa1g01286 381 PANTHER PROTEIN PHOSPHATASE 86 376 IPR015655 GO:0004722|GO:0006470
Vifa1g01286 381 SMART PP2C_4 116 375 IPR001932 -
Vifa1g01286 381 Pfam Protein phosphatase 2C 127 369 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01286 Vifa-Chr1 206809271 206810926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01286 1 380 PP2C-type Phosphatase Gene Family AT2G30020 63.384 1.77e-163 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01286 K17506 - gmx:100797934 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01286 1 206809271 206810926 Vifa1g01286 1 206809271 206810926 ECH
Vifa2g04062 2 1190774481 1190776937 Vifa1g01286 1 206809271 206810926 ECH
Vifa2g04062 2 1190774481 1190776937 Vifa1g01286 1 206809271 206810926 PCT