Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01285 ATGGAGACCAGCATGCTAGGGTTGGCTTCTTTCCCTTGCTACACGCCACCAAACCGTTCTCTTCCAAAGTTTCGGATATTATCTATGCGACAGCAATATCCCCTTGCAAGCAAAATCGTTGTTAAAAATTTACCTTATTTTACTGGTGAGAATACTCTGCAAAAGGAATTTTCTGATTTTGGCAAGATAGTTGAAGTTAAGATCGTAAAAGATGCGATCACAGAAAGATCGAAGGGATTTGCTTATATTCAGTACACAAGTCAAGATGATGCCATGCTTGCACTAGAAAACATGGATCAAAAGAGTTTTCACGGCAGGAAAATCTCTGTAAAACTTGTAAAACTTCGTCCTTATGATATGAGTGGACCCTCACCAAGGGCCTCAGGGCCACCAAAGAAGTGGAATATACCGGAGAAGCAGGAAGAAGATGTAGTAGATTGCTGGTACTGA 450 0.4111 METSMLGLASFPCYTPPNRSLPKFRILSMRQQYPLASKIVVKNLPYFTGENTLQKEFSDFGKIVEVKIVKDAITERSKGFAYIQYTSQDDAMLALENMDQKSFHGRKISVKLVKLRPYDMSGPSPRASGPPKKWNIPEKQEEDVVDCWY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01285 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Vifa1g01285 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 118 - -
Vifa1g01285 149 Gene3D - 27 142 IPR012677 -
Vifa1g01285 149 SMART rrm1_1 38 111 IPR000504 GO:0003723
Vifa1g01285 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Vifa1g01285 149 SUPERFAMILY RNA-binding domain, RBD 22 127 IPR035979 GO:0003676
Vifa1g01285 149 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01285 Vifa-Chr1 206660956 206663218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01285 8 110 Eukaryotic Initiation Factors Gene Family AT4G34110 30.097 9.04e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01285 - - psat:127118516 235.343