Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01278 ATGACCAAGTTCAATGTGAGAAGTACTAGTAGTAACCAAAAGAAGAGTAAAGGTAGCATGGTGAAGCTCATTGAGAAGCTACAAAAGAGGCTATTGCTAGTGAGAAACAAATCATCACCAACCTATGTGCCAGAGGATGTAAAAGTAGGACATTTTGCTGTTATAGCTGAAGGTATGAAAGAACATGAATCAGAGAGGTTTGTGCTTCCATTGAGTTGTTTAACAAATCCAATATTTGTGAGGCTATTGGAGCAAGCAGAAGAAGAGTATGGTTTTGATCATGAAGGTGCACTAACCATTCCTTGTAACCCTAGTGAGCTTCACAAGATGTTGCAACAATGGCATCATGAGGAGGAAGGTGCTACAACATGGAATTCTTGCAATAATTCCATGGTTTTTCAGAACTATTGA 411 0.3893 MTKFNVRSTSSNQKKSKGSMVKLIEKLQKRLLLVRNKSSPTYVPEDVKVGHFAVIAEGMKEHESERFVLPLSCLTNPIFVRLLEQAEEEYGFDHEGALTIPCNPSELHKMLQQWHHEEEGATTWNSCNNSMVFQNY 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01278 136 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 25 110 IPR003676 GO:0009733
Vifa1g01278 136 Pfam Auxin responsive protein 29 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01278 Vifa-Chr1 206362669 206363079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01278 16 102 Calmodulin-binding Proteins AT5G20810 40.860 9.66e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01278 - K14488 cam:101506786 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01278 1 206362669 206363079 Vifa1g01278 1 206362669 206363079 ECH
Vifa1g01278 1 206362669 206363079 Vifa6g00549 6 215347203 215347538 PCT