Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01276 ATGGTGTCTGAAGCAAGCAAGAAAAAGGCTGCCCAGAAGAAGGCCGCCGCTGCCGCTAAGAGAGGAGGTAAGGTAGCCGCTTCATCGAAAACGGCTTCGGAGAAAGCGGTTGACAGTGTTGCTAACGGAATTGGGGATATTCAGATATCTGATCGGACTTGCACCGGTGTCCTCTGCTCTCATCCTCTTTCCAGAGATATTAGGATAGAATCTCTATCAGTTACCTTCCACGGACATGATCTTATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGGAAATCTACCCTACTTACAGCAATTGGATTACGTGAACTTCCTATTCCTGAGCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAATTCTGGGCGCACAAGATGATGGAGGTGGTGAAGCACTTGAACGAGTTTATGAACGGCTGGAAGCTATGGATGCATCAACAGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAAACATGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCTTATTTATGAACCCAACCATTCTTCTTCTAGATGAACCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACTCGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTATAGATGGGAGCAAGAGCAGATCGCCTCAATGAAGGAATACATTGCTCGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAGACTCTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTCGTTGATGTGGGTAAACTTCCCCCACCTGTCCTCCAGTTTGTGGAGGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGACTTCGGAGTTGACTTAGACTCCAGAATTGCTTTGGTTGGACCCAATGGAGCTGGAAAGAGCACATTCCTAAAGCTCATAACTGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAACCACCTTCGCATTGCACAATTTCACCAGCACTTGACCGAAAAGCTAGACCTGGAACTGTCTGCTCTCCAATTTATGATTAAAGAATACCCTGGAAATGAAGAAGAGAGGATGAGAGCAGCTATTGGGAAATTCGGATTGTCGGGTAAAGCACAGGTGATGCCAATGAGAAATTTATCCGACGGACAGAGGAGTCGCGTGATCTTTGCATGGTTAGCCTATAGACAACCTCACTTGCTTCTCTTAGACGAGCCAACTAATCATTTAGATATTGAGACAATCGACTCTTTAGCAGAGGCATTGAATGAATGGGATGGTGGCTTGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAAATATGGGTCTGTGCTGATCAAACTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGCAGCATTTAAAGGCAAAGGCAGGTTTAGCTGACTGA 1782 0.4405 MVSEASKKKAAQKKAAAAAKRGGKVAASSKTASEKAVDSVANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGLRELPIPEHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTCDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLITGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01276 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 307 IPR003439 GO:0005524
Vifa1g01276 593 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524|GO:0016887
Vifa1g01276 593 Pfam ABC transporter 85 239 IPR003439 GO:0005524
Vifa1g01276 593 CDD ABCF_EF-3 67 284 - -
Vifa1g01276 593 CDD ABCF_EF-3 378 570 - -
Vifa1g01276 593 MobiDBLite consensus disorder prediction 1 29 - -
Vifa1g01276 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 37 588 - -
Vifa1g01276 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 572 IPR027417 -
Vifa1g01276 593 Pfam ABC transporter 394 525 IPR003439 GO:0005524
Vifa1g01276 593 Gene3D - 67 331 IPR027417 -
Vifa1g01276 593 SMART AAA_5 91 293 IPR003593 GO:0016887
Vifa1g01276 593 SMART AAA_5 403 570 IPR003593 GO:0016887
Vifa1g01276 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 309 IPR027417 -
Vifa1g01276 593 FunFam Abc transporter f family member 1 67 331 - -
Vifa1g01276 593 FunFam ATP-binding cassette sub-family F member 3 338 592 - -
Vifa1g01276 593 Coils Coil 285 305 - -
Vifa1g01276 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 593 IPR003439 GO:0005524
Vifa1g01276 593 Pfam ABC transporter 278 350 IPR032781 -
Vifa1g01276 593 Gene3D - 354 591 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01276 Vifa-Chr1 205900544 205904801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01276 378 571 Calmodulin-binding Proteins AT2G36910 26.754 7.38e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01276 K06185 - gmx:100785099 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01276 1 205900544 205904801 Vifa1g01276 1 205900544 205904801 ECH