Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g01276 | ATGGTGTCTGAAGCAAGCAAGAAAAAGGCTGCCCAGAAGAAGGCCGCCGCTGCCGCTAAGAGAGGAGGTAAGGTAGCCGCTTCATCGAAAACGGCTTCGGAGAAAGCGGTTGACAGTGTTGCTAACGGAATTGGGGATATTCAGATATCTGATCGGACTTGCACCGGTGTCCTCTGCTCTCATCCTCTTTCCAGAGATATTAGGATAGAATCTCTATCAGTTACCTTCCACGGACATGATCTTATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGGAAATCTACCCTACTTACAGCAATTGGATTACGTGAACTTCCTATTCCTGAGCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAATTCTGGGCGCACAAGATGATGGAGGTGGTGAAGCACTTGAACGAGTTTATGAACGGCTGGAAGCTATGGATGCATCAACAGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAAACATGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCTTATTTATGAACCCAACCATTCTTCTTCTAGATGAACCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGTATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACTCGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTATAGATGGGAGCAAGAGCAGATCGCCTCAATGAAGGAATACATTGCTCGATTTGGCCATGGATCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAGACTCTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTCCGCTTCGTTGATGTGGGTAAACTTCCCCCACCTGTCCTCCAGTTTGTGGAGGTGACATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGACTTCGGAGTTGACTTAGACTCCAGAATTGCTTTGGTTGGACCCAATGGAGCTGGAAAGAGCACATTCCTAAAGCTCATAACTGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAACCACCTTCGCATTGCACAATTTCACCAGCACTTGACCGAAAAGCTAGACCTGGAACTGTCTGCTCTCCAATTTATGATTAAAGAATACCCTGGAAATGAAGAAGAGAGGATGAGAGCAGCTATTGGGAAATTCGGATTGTCGGGTAAAGCACAGGTGATGCCAATGAGAAATTTATCCGACGGACAGAGGAGTCGCGTGATCTTTGCATGGTTAGCCTATAGACAACCTCACTTGCTTCTCTTAGACGAGCCAACTAATCATTTAGATATTGAGACAATCGACTCTTTAGCAGAGGCATTGAATGAATGGGATGGTGGCTTGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAAATATGGGTCTGTGCTGATCAAACTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGCAGCATTTAAAGGCAAAGGCAGGTTTAGCTGACTGA | 1782 | 0.4405 | MVSEASKKKAAQKKAAAAAKRGGKVAASSKTASEKAVDSVANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGLRELPIPEHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTCDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTFLKLITGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD | 593 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g01276 | 593 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 67 | 307 | IPR003439 | GO:0005524 | |
Vifa1g01276 | 593 | ProSitePatterns | ABC transporters family signature. | 211 | 225 | IPR017871 | GO:0005524|GO:0016887 | |
Vifa1g01276 | 593 | Pfam | ABC transporter | 85 | 239 | IPR003439 | GO:0005524 | |
Vifa1g01276 | 593 | CDD | ABCF_EF-3 | 67 | 284 | - | - | |
Vifa1g01276 | 593 | CDD | ABCF_EF-3 | 378 | 570 | - | - | |
Vifa1g01276 | 593 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Vifa1g01276 | 593 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 37 | 588 | - | - | |
Vifa1g01276 | 593 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 361 | 572 | IPR027417 | - | |
Vifa1g01276 | 593 | Pfam | ABC transporter | 394 | 525 | IPR003439 | GO:0005524 | |
Vifa1g01276 | 593 | Gene3D | - | 67 | 331 | IPR027417 | - | |
Vifa1g01276 | 593 | SMART | AAA_5 | 91 | 293 | IPR003593 | GO:0016887 | |
Vifa1g01276 | 593 | SMART | AAA_5 | 403 | 570 | IPR003593 | GO:0016887 | |
Vifa1g01276 | 593 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 61 | 309 | IPR027417 | - | |
Vifa1g01276 | 593 | FunFam | Abc transporter f family member 1 | 67 | 331 | - | - | |
Vifa1g01276 | 593 | FunFam | ATP-binding cassette sub-family F member 3 | 338 | 592 | - | - | |
Vifa1g01276 | 593 | Coils | Coil | 285 | 305 | - | - | |
Vifa1g01276 | 593 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 378 | 593 | IPR003439 | GO:0005524 | |
Vifa1g01276 | 593 | Pfam | ABC transporter | 278 | 350 | IPR032781 | - | |
Vifa1g01276 | 593 | Gene3D | - | 354 | 591 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g01276 | Vifa-Chr1 | 205900544 | 205904801 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g01276 | 378 | 571 | Calmodulin-binding Proteins | AT2G36910 | 26.754 | 7.38e-09 | 57.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g01276 | K06185 | - | gmx:100785099 | 1070.46 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g01276 | 1 | 205900544 | 205904801 | Vifa1g01276 | 1 | 205900544 | 205904801 | ECH |