Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01268 ATGGAGGTTGACGGTGATACGAGTGTTGGAAATCGAAAACGGAAAAGAGGGTCGTTGAAAACAAAGCTTCTGGTGAATGAAAAAGTTGAGCTGAGGAGTTTGGAAGATGGTTTTCTGGGATCATGGCATCCGGGGAAGATTATCCGCCGCGCAAGGACTAAGCGTTATGTTAAATATGACAATATTCTAAATGACGATGAATCGGATTACATTGTTGATGTTGTGAGTGTTTCTAGTGTTTTGGATGGTGTAGTTGATTCTGCTTCTGCTTCTGCTTCAGATTGTGGTTACAGACGTGGACTGATTAGACCAGTCCCGCCTCCGATCGAGTTAGAGAGAATGGATCTTCTATTCGGATTTTGCGTTGATGTGAATTATCAGGATGCTTGGTGGGAAGGTGTGATATTTGATTGCTGCAATGGATTGGAGGAGAGGAGCATATTCTTCCCTGATTTAGGTGATGAAATGAAGGTTGGAGTTAAACAGTTGAGGATCACTCAGGATTGGGATGAATCAACTGAGAATTGGTTACCAAGAGGGAAATGGGCGTTTCTTGAGTTGTTTGAGGAGTGTGAGACCGTGTCCTATGTTGCAATCTCGGTTAAACAGATTTGGTATGATGTTAGGATGAGAAAGGATTATGCTGAGACCATTGGAGAATGGACTTGTAATGTGAAAGAATTGTGGAGAGACCTTGTTGTGGAGGTGATTGGTGAGTACTATACCATCACGCTTAACGAGGTTCGGCCCGTCTTAAACCTTCCGAAGAATTTACTCGAAGGAGGGTCATCTGAACCAACTGATAATGTTCACATTGAAGCTAATCATGGTAATGCGTCTGGTTCTGAAGTTGGAACATCTGATAGGCCTAAGGAAAATGCTGATTCTTCAAACTTGTTGGATGCAAATCAAAACTGTGGTAAGACTAGCGTCATTCCTTTGGCGGATGGAGACTGTGAGAAGCAAATTATTTTACATGAAGATCTCGAATCAGATAAGAATCGAAAACGGAGACGTTCTGCGTCTATAATTTGGCAACCTCTGAGACTGTCTGAAGTTGAATTCTGTCCTGAAGTTATTCATGAGTATGCAGTTGGATGTAGGAGCAAGACAGTTCGGGAAACTTTGAAGACGAAAGTAAGGAAACATCTTGCGTTTCTTGGTTGGACAATTGAGTGGACCGAAGACAATTGTCATAATAGTAGACGATACCGGTACATTTCACCGGATAAGTGTGACCAGAAGTGTTACTCTTCGATTTTTCTAGTTACTCAAGTTTTGCAAAAGCATCCCGACATGAACTCTGTGCTGCCCCAGATTGACAGAAATCTTTCACATCGGTTCTCTGATCCGCTCCGAAAGAACAATGATCTAGATGTTTGTCCTCCAACCACTGAGCCTTCTCCAGTTAAAGATCAACTTGAACCAGAACTCTGTCCTCTAGCCGTCGTAAAATATTACTTGCACACATTAGAGAGAAACTCGGCTGAGAAGAGAGAGTGGAAATTGAAGGCGAAAAAACATCTATTAGCAGAAGGATGGATCTTTGACTACCCAACTGGAAGAAGGAGGGCAACTTTGTACAAGTCTCCACAAAATCATTGCTTACGCACACTTCGAGGTGCATGCAGGCTGCACATTAAAGAAAAAATTCCTGAATGGACTGATTCAGACCATGTTGATGGTGATGCTCTATTGCTGAGTGTGTTCCAATTGCTTCAAGAAGAGCCTGAATTACAAACTATAGATGATTCATCACAAACTGCAAAGAGAAACCGTAAAGGCGCAAGGAGTTCAAAGAGTAGTGCACAAAAGAATCTAGAGAAGGAAGTACCTAACCGTAGAGGTGCAAGTACTTCAAAGGCTAGTGCACAAAAGGATCAAGAGGAGGAAGAACTTACCCGGGTGCTAAGAACAAGCAAAAGGGTGCAGAAGGTTTTCGGTTTGTCACATCAAAAGCCTCAAAATATTGTGTCTTGGTTAATAGGTTGCAACATTGTGTTGCCAAGATACAAGGTCTATTACTGGGAAACAGAAGGCAGAAACTCACCTACATTTGAGGGAAGGATTACTATAGAAGGAATTAAGTGTTCATGTTGTCAGAATGTATTTGGACTCAGCGGCTTTGCAAACCATGCTGGTGGAAGCAGTAACCGCAGGCCTTCGGAGTGTATCTTTTTGAAGGATGGTAGGTCACTGTTAGATTGCATGAGGGAAGTAATGCATGATCACAGGTCAAGGGAAGCCAAAGAGAAACAATGCAATAATCCGTTTGAAGGAGAAAATGACAACATTTGTTCTGTTTGTAACTATGGTGGTGAACTTATTTTATGCGACCAATGCCCATCGTCGTTTCATAAGAAGTGTCTTAATTTGGAGGGCATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGCGGAATTTGTGGCGAAAACAAAATTGAAGAGAAAGAAGATGGACATTTTCTTACTTGCATTCAATGTGAACATAAATATCATGTTGAGTGCCTCAGAAATAGACCAAAAGATAACTCGAGACGATATATGAAAAATTGGTTCTGCAGAGAAGAGTGTGAAAGGGTCTACATCGGGCTCCAAAATCTATTGGGAAAGCCGGTTTTAGTGGGCGAGGACAATCTAACTTGGACATTGGTGAAGTATGTCAACTCTGAGAGTTGTGGTGTTGGCAGTGCTGAAAATGATCTAGTGGCAGAGAGTTACAGCAAACTAAGCGTTGCACTTTCGGTGATGCACGAATGCTTTGAACCCTTACCAAACGCCTTCTCTAGCAGAGATATCGTGGAAGACGTTATATTTAACCAAAGGTCGGAGCTAAACAGACTAAACTTCCAGGGTTTCTATACCGTACTGCTAGAGAGGAATGAAGAACTAATCAGTGTGGCAACTATAAGGATATTTGGAGACAAGATAGCTGAAGTTCCTCTAGTGGGTACCAGATTTCAGTATAGACGACTTGGAATGTGTCGTGTTTTAATGGACGAGCTTGAAAAGAAGCTAAAGCATCTGGGAGTGGGGAGACTAGTCTTACCTGCTGTACCTGGTGTACTAGAAACATGGACCAATTCTTTTGGTTTCAAGCAGATGACTAATTTCGAGAGATCACAGTTTATAGGCTATTCTTTCCTAGACTTTCAGGGAACTACCATGTGCCAGAAACTGTTAACAAGACTTCCATCTCCGGAATCGGGCGTAACAAGAGACACTACTCCAAAACAACAAGACCTTGGCTTCTCAGTTAAATGTAGAATAAATTTTGAAAAAGCTAGTCCAGGATCAGAAGTGGATCAAGCAGAAAGGACAGGAAAAATGGAGTTACAAGTTTTGGAGACCTATGCCTAG 3363 0.4205 MEVDGDTSVGNRKRKRGSLKTKLLVNEKVELRSLEDGFLGSWHPGKIIRRARTKRYVKYDNILNDDESDYIVDVVSVSSVLDGVVDSASASASDCGYRRGLIRPVPPPIELERMDLLFGFCVDVNYQDAWWEGVIFDCCNGLEERSIFFPDLGDEMKVGVKQLRITQDWDESTENWLPRGKWAFLELFEECETVSYVAISVKQIWYDVRMRKDYAETIGEWTCNVKELWRDLVVEVIGEYYTITLNEVRPVLNLPKNLLEGGSSEPTDNVHIEANHGNASGSEVGTSDRPKENADSSNLLDANQNCGKTSVIPLADGDCEKQIILHEDLESDKNRKRRRSASIIWQPLRLSEVEFCPEVIHEYAVGCRSKTVRETLKTKVRKHLAFLGWTIEWTEDNCHNSRRYRYISPDKCDQKCYSSIFLVTQVLQKHPDMNSVLPQIDRNLSHRFSDPLRKNNDLDVCPPTTEPSPVKDQLEPELCPLAVVKYYLHTLERNSAEKREWKLKAKKHLLAEGWIFDYPTGRRRATLYKSPQNHCLRTLRGACRLHIKEKIPEWTDSDHVDGDALLLSVFQLLQEEPELQTIDDSSQTAKRNRKGARSSKSSAQKNLEKEVPNRRGASTSKASAQKDQEEEELTRVLRTSKRVQKVFGLSHQKPQNIVSWLIGCNIVLPRYKVYYWETEGRNSPTFEGRITIEGIKCSCCQNVFGLSGFANHAGGSSNRRPSECIFLKDGRSLLDCMREVMHDHRSREAKEKQCNNPFEGENDNICSVCNYGGELILCDQCPSSFHKKCLNLEGIPDGDWFCPSCRCGICGENKIEEKEDGHFLTCIQCEHKYHVECLRNRPKDNSRRYMKNWFCREECERVYIGLQNLLGKPVLVGEDNLTWTLVKYVNSESCGVGSAENDLVAESYSKLSVALSVMHECFEPLPNAFSSRDIVEDVIFNQRSELNRLNFQGFYTVLLERNEELISVATIRIFGDKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKHLGVGRLVLPAVPGVLETWTNSFGFKQMTNFERSQFIGYSFLDFQGTTMCQKLLTRLPSPESGVTRDTTPKQQDLGFSVKCRINFEKASPGSEVDQAERTGKMELQVLETYA 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01268 1120 SMART agenet_At_2 114 171 IPR014002 -
Vifa1g01268 1120 MobiDBLite consensus disorder prediction 263 302 - -
Vifa1g01268 1120 Pfam Agenet domain 27 107 IPR008395 -
Vifa1g01268 1120 SMART ring_2 807 862 IPR001841 -
Vifa1g01268 1120 SMART ring_2 766 805 IPR001841 -
Vifa1g01268 1120 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 947 1049 IPR016181 -
Vifa1g01268 1120 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 901 1062 IPR000182 GO:0016747
Vifa1g01268 1120 Pfam PHD-finger 765 807 IPR019787 -
Vifa1g01268 1120 MobiDBLite consensus disorder prediction 581 633 - -
Vifa1g01268 1120 SUPERFAMILY FYVE/PHD zinc finger 757 810 IPR011011 -
Vifa1g01268 1120 PANTHER PHD FINGER PROTEIN 12 482 1089 IPR042163 GO:0003714|GO:0045892
Vifa1g01268 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 862 IPR013083 -
Vifa1g01268 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 807 IPR013083 -
Vifa1g01268 1120 SMART PHD_3 765 806 IPR001965 -
Vifa1g01268 1120 SMART PHD_3 807 859 IPR001965 -
Vifa1g01268 1120 Gene3D - 897 1066 - -
Vifa1g01268 1120 CDD NAT_SF 957 1017 - -
Vifa1g01268 1120 ProSiteProfiles Zinc finger PHD-type profile. 763 808 IPR019787 -
Vifa1g01268 1120 Pfam Tify domain binding domain 688 739 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01268 Vifa-Chr1 204379004 204384382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01268 23 1005 PHD Transcription Factor Family AT5G58610 35.359 1.38e-179 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g01268 Agenet 2e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01268 - - gmx:102661511 1290.4