Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01265 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACGTGGCATTGGCAACATCAGCAAAATTTATAATGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1230 0.3894 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVAIISGNNISEKAYEDGRTMVESKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDVALATSAKFIMLNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01265 409 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa1g01265 409 Gene3D Cytochrome P450 104 408 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS E-class P450 group I signature 303 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS E-class P450 group I signature 219 245 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS E-class P450 group I signature 262 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS E-class P450 group I signature 339 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS E-class P450 group I signature 199 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS E-class P450 group I signature 349 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 SUPERFAMILY Cytochrome P450 200 402 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa1g01265 409 MobiDBLite consensus disorder prediction 149 190 - -
Vifa1g01265 409 PRINTS P450 superfamily signature 340 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS P450 superfamily signature 210 227 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 PRINTS P450 superfamily signature 263 274 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa1g01265 409 SUPERFAMILY RING/U-box 13 66 - -
Vifa1g01265 409 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa1g01265 409 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 196 405 - -
Vifa1g01265 409 FunFam Geraniol 8-hydroxylase 153 402 - -
Vifa1g01265 409 Pfam Cytochrome P450 203 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01265 409 Pfam Protein of unknown function (DUF3675) 67 128 IPR022143 -
Vifa1g01265 409 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa1g01265 409 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 342 351 IPR017972 GO:0005506|GO:0016705
Vifa1g01265 409 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01265 Vifa-Chr1 203916077 203918060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01265 203 405 Cytochrome P450 AT2G45550 56.650 3.00e-85 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01265 - - cave:132173603 300.827