Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01264 ATGCAGAGATCAGGCTACGGTTCGGATGGAATATACCGTTCTCTTAGACCTTCCCTCACCTTACCAAAAAACCCGAACCTCTCTCTCGTCACACACCTTTTCAACAACGTCGCTTCATCCCAAACCAAAACCGCTCTTATAGATGCCGACTCTAATCAAACACTAACCTTCGCTCAATTAAAAGCCCTCACAATAAAACTCTCACGCGCTCTATTCAACACCGGTGTAAAAAAAACCGATGTCGTTCTCTTCCTCGCTCCAAACAGTTACCTCTACCCCGTTCTCTTCCTCGCCGTCACCTCCATCGGCGCAATCGCCTCCACTGTCAACCCCGCTTACACCAGCGCAGAAGTCTCCAAACAAGCTAAGGATTCAAATCCGAAACTCATTATCACCGTCGCTGAGTTATGGGAGAAAGTACAACACCTCAACCTCCCCGCGGTTTTTCTCAATTCCGATACCGGGACATCGACATCGACACCGAACTCGAATATCACGAGTTTCGAATCTTTTATCAAACTCGGAGACTCCGGTACAGATTTTCAGAAAATTGACGTGAAACAAACCGATACAGCGGCGCTATTGTATTCCTCTGGGACCACTGGTTTAAGCAAAGGCGTGATTCTGACTCACGCGAATTTCATTGCTTCTGCGAAGATGATTACGATGGATGATGAACTGAATGGGGAAATAGACGATGTGTATCTCGTTGTTCTTCCGATGTTTCATGTTTTTGGGCTTGCGGTTATTACTTATTCGCAGCTTCAGAGAGGGAACGCGGTGGTTTCGTTGAAGAGGTTTGAGTTTGAAGTGGTGTTGAAGACGATTGAGAAGTTTAGGGTTACGAAGTTATGGGTTGTGCCTCCTATTATACTTGCTCTTGCTAAGCATAGTTTGGTTGATAAGTATGACCTTTCGTGTTTGAAGTATGTTGGTTCGGGGGCTGCGCCTCTTGGGAGAGAGTTGATGCAAGAGTGCGCCAAGCGATTCCCTCGTGCGATTATTTCTCAGGGGTATGGTATGACTGAAACTACTGGGATTGTTTCTGTGGAGAACACAAGGATGGGGATTAGGCACACTGGCTCAACTGGAATGCTTGTTGCTGGAGTTGAAGCTCAAATTGTCAGTGTGGATACATTGAAGCCACTCCCTCCTGGACAGCTTGGGGAGATATGGGTTAGGGGTCCGAATATGATGCGAGGTTATCATAACAATACACAGGCCACAAGATTGACTATAGATCAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGCCATCTTTTTGTCGTTGATCGTATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTCGCACCAGCAGAACTTGAAGGGCTTCTTATTTCTCATCCTGAAATACTTGATGCTGTTGTCATTCCATATCCTGATGCCGAAGCTGGTGAGGTTCCGGTTGCCTATGTTGTGCGATCACCTAATAGTTCATTGACCGAGGAAGATATTAAAAAATTTATCGCTAATCAGGTAGCGCCTTTCAAAAGATTGCGAAGGGTTACATTCATCAACACTGTTCCAAAAACAGCATCAGGAAAAATTCTGAGAAGAGAGCTTATCGATAAAGTGCGATCCAAAATATAA 1632 0.4491 MQRSGYGSDGIYRSLRPSLTLPKNPNLSLVTHLFNNVASSQTKTALIDADSNQTLTFAQLKALTIKLSRALFNTGVKKTDVVLFLAPNSYLYPVLFLAVTSIGAIASTVNPAYTSAEVSKQAKDSNPKLIITVAELWEKVQHLNLPAVFLNSDTGTSTSTPNSNITSFESFIKLGDSGTDFQKIDVKQTDTAALLYSSGTTGLSKGVILTHANFIASAKMITMDDELNGEIDDVYLVVLPMFHVFGLAVITYSQLQRGNAVVSLKRFEFEVVLKTIEKFRVTKLWVVPPIILALAKHSLVDKYDLSCLKYVGSGAAPLGRELMQECAKRFPRAIISQGYGMTETTGIVSVENTRMGIRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMRGYHNNTQATRLTIDQKGWVHTGDLGYFDEDGHLFVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDIKKFIANQVAPFKRLRRVTFINTVPKTASGKILRRELIDKVRSKI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01264 543 Gene3D - 441 542 IPR045851 -
Vifa1g01264 543 CDD 4CL 21 535 - -
Vifa1g01264 543 Gene3D - 9 440 IPR042099 -
Vifa1g01264 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Vifa1g01264 543 SUPERFAMILY Acetyl-CoA synthetase-like 23 541 - -
Vifa1g01264 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Vifa1g01264 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Vifa1g01264 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Vifa1g01264 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 538 - -
Vifa1g01264 543 Pfam AMP-binding enzyme 36 445 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01264 Vifa-Chr1 203906021 203909133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01264 1 543 Monolignol Biosynthesis Gene Families AT4G05160 65.625 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01264 K01904 - gmx:100797843 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01264 1 203906021 203909133 Vifa1g01264 1 203906021 203909133 ECH