Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01258 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGACCATGGTCACCAGAAGAAGATTCAAAGCTCAAAGAGTACATAGAAAAAAATGGAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGGTCTAAGAAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATTTAAGGCCAAACATTAAACATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGATATCAAAAACTACTGGAACACAAAACTCAAGAAGAAACTCATGAGTTTTCTTCCTCAATCTCATAACACAACACTCTTACCCTATCAAAACCCTACTTCATTTCCTTCTCATTGCACCTCATATAATTACAACCAAATTTCACAACCAAACTCATCTTACACCACAAACTTTGAACCATGCTCTCTTCCTTTTTACCCTAACCAAGAGTCCTTACTCAGTGGTGCTAGCACTTCCATGCAATATCATCATCATCATCCTATGAGAGAGAGTACTTTGGCTATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCAGAAGGAAGTTTTGGGAAACAAGAAGAAATAATGGGGTTTCAGAATCTCATGCAAAGCAGCAACAACATGATCACTCTGAGTCATGGAAGTGATGTTAACCAATGGGAAACTGAAACGGAAAAAGTGAACTTGTGCTTTAGTCAAAATCAAAAGCAAATTCTTCCAACTTCTTTAGGGTATGATCTTGAGTATATTAAGCAATTAATTAGTAGTGATAATGGTTACTTGAGTATTGATGAAAACAAGACTGAGGAGAAGACTATGTACTACTACTACTCAACTGGAACTGATGACTACTGA 927 0.3743 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKNGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSFLPQSHNTTLLPYQNPTSFPSHCTSYNYNQISQPNSSYTTNFEPCSLPFYPNQESLLSGASTSMQYHHHHPMRESTLAMFGSEGSCCSSSEGSFGKQEEIMGFQNLMQSSNNMITLSHGSDVNQWETETEKVNLCFSQNQKQILPTSLGYDLEYIKQLISSDNGYLSIDENKTEEKTMYYYYSTGTDDY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01258 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa1g01258 308 SMART sant 13 64 IPR001005 -
Vifa1g01258 308 SMART sant 67 115 IPR001005 -
Vifa1g01258 308 Gene3D - 7 68 - -
Vifa1g01258 308 Gene3D - 70 134 - -
Vifa1g01258 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa1g01258 308 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vifa1g01258 308 CDD SANT 16 62 IPR001005 -
Vifa1g01258 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vifa1g01258 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa1g01258 308 PANTHER OS09G0431300 PROTEIN 1 249 - -
Vifa1g01258 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa1g01258 308 CDD SANT 70 113 IPR001005 -
Vifa1g01258 308 FunFam Transcription factor RAX3 7 68 - -
Vifa1g01258 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01258 Vifa-Chr1 203258698 203259846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01258 1 118 MYB Transcription Factor Family AT5G65790 88.136 3.28e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01258 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01258 K09422 - gmx:100796382 349.362