Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01241 ATGAGTTGTTTTCCTTGTGTTGGAAAATCACGCCAAAAGAATCTAGCCAACAATTCTAGCCGTAGAGACAAGCATACTAATTTCACTTCAGCTGATAAGGTCAAAGTTGATGTGAATTTGAATTTGAGTGCGAATGATAAAAAAGAAGATGAATCTAAACATGATCAGCTTTCCTTGGACGTGAAGAATTTGAATTTGAAAGACGGGGTTTCGCCGGATGGAAAAGTTGCAAAGACATTTACTTTTCAAGAACTCGAAGCTGCAACAGGGAATTTTAGAGCAGATTGCTTTGTTGGTGAAGGAGGGTTTGGGAAGGTTTATAAGGGTAATATTGAGAAAATAAACCAGGTTGTTGCGATAAAGCAACTCGACCCGAATGGTCTTCAAGGGATCAGAGAGTTTGTCGTTGAAGTGTTGACGCTTAGTTTGGCAGACCACCCGAATCTTGTCAAGCTATTAGGGTTTTGTGCCGAGGGAGAGCAGAGGCTATTGGTTTACGAGTACATGCCATTGGGATCTTTGGAGAATCATTTGCATGATCTTTCGTCCGGAAGAAAGCCGCTGGATTGGAATACAAGGATGAGAATAGCGGCTGGTGCAGCTCGAGGTGAAGATTATAATCCAAAGTTATCTGACTTCGGCTTGGCAAAAGTAGGCCCGATTGGTGACAAGACTCATGTTTCAACTAGAGTTATGGGCACGTATGGGTACTGTGCTCCGGATTACGCAATGACGGGTCAATTGACGTTCAAGTCTGATATTTACAGCTTTGGAGTTGTTCTTTTGGAGCTCATCACTGGCAGAAAGGCTATCGACCATAAAAAACCTGCTAAAGAACAAAACCTAGTCGCATGGGCAAGGCCATTATTCAGAGATCGACGAAGATTCTCGGAGATGGTAGATCCATTGCTTCAAGGTCATTATCCAGTGAGAGCTGATGTGGTTACGGCTCTAAATTACCTTGCTTCGCAAAAGTATGATCCGCAAACTCATCCAATACAAAGACCGAGAAAAAGTTCATCTTCTACGAGAGGTAGTAGCGCAGGCCATAGACGTGTTACTAGTAATGATTCCGAGACGGACAGATTTGGAGATTAG 1098 0.429 MSCFPCVGKSRQKNLANNSSRRDKHTNFTSADKVKVDVNLNLSANDKKEDESKHDQLSLDVKNLNLKDGVSPDGKVAKTFTFQELEAATGNFRADCFVGEGGFGKVYKGNIEKINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHPNLVKLLGFCAEGEQRLLVYEYMPLGSLENHLHDLSSGRKPLDWNTRMRIAAGAARGEDYNPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHKKPAKEQNLVAWARPLFRDRRRFSEMVDPLLQGHYPVRADVVTALNYLASQKYDPQTHPIQRPRKSSSSTRGSSAGHRRVTSNDSETDRFGD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01241 365 PANTHER OS07G0668900 PROTEIN 3 203 - -
Vifa1g01241 365 Gene3D Phosphorylase Kinase; domain 1 77 168 - -
Vifa1g01241 365 SMART serkin_6 92 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01241 365 MobiDBLite consensus disorder prediction 326 365 - -
Vifa1g01241 365 Coils Coil 47 67 - -
Vifa1g01241 365 Pfam Protein tyrosine and serine/threonine kinase 98 206 IPR001245 GO:0004672|GO:0006468
Vifa1g01241 365 Pfam Protein tyrosine and serine/threonine kinase 209 278 IPR001245 GO:0004672|GO:0006468
Vifa1g01241 365 FunFam probable serine/threonine-protein kinase RLCKVII 65 168 - -
Vifa1g01241 365 Gene3D Transferase(Phosphotransferase) domain 1 169 340 - -
Vifa1g01241 365 SUPERFAMILY Protein kinase-like (PK-like) 78 337 IPR011009 -
Vifa1g01241 365 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Vifa1g01241 365 ProSiteProfiles Protein kinase domain profile. 92 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01241 365 MobiDBLite consensus disorder prediction 326 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01241 Vifa-Chr1 200727268 200729423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01241 1 323 Glycoside Hydrolase AT3G07070 47.861 1.88e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vifa1g01241 PK_Tyr_Ser-Thr 5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01241 - - gmx:100794680 531.946