Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01234 ATGGAGAAGCATTTGAAGAAATCTCCATCTTCTTCTTCATCATCATCAATGAGACCATCATTTCCAAGAGATCCTCGCGGCTCCTTAGAAGTATTCAATCCAACTAGCAACACCAGCTCGCCGGTACGCTCACCTTCAAATCTGAAAAACTGGACGGAAACGGAAGAGCCGCGCAACGAATTCCCCGATGAAGTCACCAACACTTCCTGGATGGCAATCAAGGAAGAAGAAACCGGTGCGGCAGTACAGAGAGCCGCCGAGTGGGGATTGGTGCTCACAACAGATGCTGAAACCGGGAAACCACAAGGAGTGGCAGTTCGACACTCCGGCGGAGACGAGCCGAATGCCGTTAAACTTGAATCCAAAAGAAACTCCAATAACTCCGTCCGAACTTCCGGTGAATCTTCCGACGGAGGTGATCCCCGCGGGTTTCCGAGAGTTTCGGATGATTTGAAAGACGCTTTATCGGCTTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTTTGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACATCAAAAGAAGTCATAGGAAGAAACTGTCGGTTTTTACAGGGTGCGGATACGGATCCGAATGACGTGGCAAGGATAAGGGAAGCGTTGGAAGGTGGGAAAAGTTTTTGTGGAAGGTTGCTGAATTACAAGAAGGATGGAACTCCCTTCTGGAATCTTCTCACTATTTCTCCCATCAAGGATGATGATGGCAATGTGCTCAAGTTAATTGGAATGCTGGTGGAAGTTAACAAGCATACTGAGGGGTCCAAAGAGAAGAAGCTGCGTCCCAATGGGTTGCCTGAATCCTTAATTCGATACGATGCTCGTCAGAAAGAGAAAGCTACATCTTCTGTATCTGAGTTATTAGAAGCCATGAAGCGCCCCCGCGCAATGAGTGAATCCGGACACCGTCCCTTTATCAGAAAATCAGGAGGAGGTGGAGGTTCTGAAGAAGATGAAAGATTAGAAAACAAATCAAGGAGAAAATCTGATAGCGTAGCTTCTTTTAGACCAAAACCGCAAGGAAAAATTAGGCATTCTATGGAACGAATCAGTGAGCTGCCTGAAAATAAACAGAAAAACTCTCGTCGTGGTTCGTTCATGGGGTTCATGAGGAAAAGTCATTCCATTGATGAAAGCGTTGATAATGAAGTTATTGTAGATGTGAGCTCTGGGAGTGAGGATGATGAGAGGGATGATAGTTTTGAATTTGATGACAAAGAAAAACTGAAGGAAAAGAGAAAAGGTCTTGATCTTGCAACTACACTCGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGTTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGGAAAAATTGCAGGTTTCTGCAAGGACAAGAAACTGATCCAGCAACTGTGAGAAAAATCAGAGAGGCAATTGACAACCAAACAGAAGTAACTGTGCAACTAATCAATTATACAAAGAGTGGGAAAAAGTTCTGGAACTTGTTTCATTTACAACCTATGCGTGATCATAAGGGAGAAGTACAATACTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATTGCAGAAGAGTCTGCAAAGGAGGGAGAACTATTGGTAAAAGAAACAGCAGAAAATGTTGGTGAGGCAGTGAAAGAGCTTCCTGATGCTAATCAGAAACCAGACGATTTATGGAAGAATCATTCAAAAGTGGTTCGCCCCAAACCTCATAGGAAGGATGACGATGCTTGGAGAGCAATCCAAAACGTTGTAGAAAATGGAGAACAGGTAGGCCTAAAACACTTTAGGCCAATTAAGCCTTTGGGGTCTGGAGACACCGGAAGTGTGCATCTGGTGGAGCTAGAGGGAACTGGTCATTACTTTGCTATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAAAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCTGGGGGCGAACTATTCCTGCTTCTTGACCAGCAGCCAACAAAGGTTCTCAAGGAAGATTCTGTTAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTATCTTCATTGTCTAGGCATAATTTACCGGGATTTGAAGCCAGAAAATGTGCTGATCCAGCGCAACGGACATGTGTCTCTAACAGATTTTGATTTATCATGTTTAACATCTTGCAAGCCACAGCTTATACTTCCAGCTACCGAGGAAAAGAAGAAGAGAAAGAAGAAAAAGAAAAAGGGACAACCGAAAAATCAAGAGGTTCCAATGTTCATGGCAGAACCAATGAGAGCGTCCAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACAGGTTCAGGTCATACTAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTTTATGGATATACACCATTCAGAGGAAAGACAAGACAAAAGACATTTGGAAATATTCTTCACAAAGATCTTAAGTTTCCCAAAAGCAAACCGGTAAGTCCCCATGGCAAGCAATTAATTTACTGGCTACTGCACAGAGATCCCAAAAACAGATTGGGTTCACTTGAAGGAGCAAATGAAATTAAGAACCATCCATTCTTCAAGAATGTCAATTGGGCTCTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTATCTTACTGGACAATGATGAGAAGAAAGAAGCCAAAGACATTGACCCTGGCTTAGATGATTTACAGAAAAATATTTTCTGA 2913 0.4271 MEKHLKKSPSSSSSSSMRPSFPRDPRGSLEVFNPTSNTSSPVRSPSNLKNWTETEEPRNEFPDEVTNTSWMAIKEEETGAAVQRAAEWGLVLTTDAETGKPQGVAVRHSGGDEPNAVKLESKRNSNNSVRTSGESSDGGDPRGFPRVSDDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLEAMKRPRAMSESGHRPFIRKSGGGGGSEEDERLENKSRRKSDSVASFRPKPQGKIRHSMERISELPENKQKNSRRGSFMGFMRKSHSIDESVDNEVIVDVSSGSEDDERDDSFEFDDKEKLKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGQETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIAEESAKEGELLVKETAENVGEAVKELPDANQKPDDLWKNHSKVVRPKPHRKDDDAWRAIQNVVENGEQVGLKHFRPIKPLGSGDTGSVHLVELEGTGHYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDSVRFYAAEVVIALEYLHCLGIIYRDLKPENVLIQRNGHVSLTDFDLSCLTSCKPQLILPATEEKKKRKKKKKKGQPKNQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFGNILHKDLKFPKSKPVSPHGKQLIYWLLHRDPKNRLGSLEGANEIKNHPFFKNVNWALVRCTKPPELDAPILLDNDEKKEAKDIDPGLDDLQKNIF 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01234 970 Gene3D Transferase(Phosphotransferase) domain 1 714 937 - -
Vifa1g01234 970 NCBIfam PAS domain S-box protein 454 544 IPR000014 -
Vifa1g01234 970 NCBIfam PAS domain S-box protein 174 267 IPR000014 -
Vifa1g01234 970 ProSiteProfiles PAS repeat profile. 147 218 IPR000014 -
Vifa1g01234 970 ProSiteProfiles PAC domain profile. 503 557 IPR000700 -
Vifa1g01234 970 ProSiteProfiles Protein kinase domain profile. 630 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01234 970 MobiDBLite consensus disorder prediction 1 68 - -
Vifa1g01234 970 CDD STKc_phototropin_like 628 944 - -
Vifa1g01234 970 FunFam Putative LOV domain-containing protein 714 937 - -
Vifa1g01234 970 SMART pac_2 224 266 IPR001610 -
Vifa1g01234 970 SMART pac_2 506 548 IPR001610 -
Vifa1g01234 970 SUPERFAMILY PYP-like sensor domain (PAS domain) 445 544 IPR035965 -
Vifa1g01234 970 SMART serkin_6 630 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01234 970 MobiDBLite consensus disorder prediction 30 52 - -
Vifa1g01234 970 FunFam LOV domain-containing protein 418 582 - -
Vifa1g01234 970 SMART pas_2 149 218 IPR000014 -
Vifa1g01234 970 SMART pas_2 431 500 IPR000014 -
Vifa1g01234 970 FunFam Putative LOV domain-containing protein 161 317 - -
Vifa1g01234 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672|GO:0006468
Vifa1g01234 970 CDD PAS 444 544 IPR000014 -
Vifa1g01234 970 Pfam PAS domain 452 544 IPR000014 -
Vifa1g01234 970 Pfam PAS domain 168 263 IPR000014 -
Vifa1g01234 970 FunFam LOV domain-containing protein 629 713 - -
Vifa1g01234 970 Pfam Protein kinase domain 632 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01234 970 Gene3D PAS domain 161 316 - -
Vifa1g01234 970 SUPERFAMILY PYP-like sensor domain (PAS domain) 168 260 IPR035965 -
Vifa1g01234 970 MobiDBLite consensus disorder prediction 267 380 - -
Vifa1g01234 970 MobiDBLite consensus disorder prediction 120 135 - -
Vifa1g01234 970 Gene3D Phosphorylase Kinase; domain 1 629 713 - -
Vifa1g01234 970 MobiDBLite consensus disorder prediction 327 348 - -
Vifa1g01234 970 ProSiteProfiles PAS repeat profile. 429 502 IPR000014 -
Vifa1g01234 970 SUPERFAMILY Protein kinase-like (PK-like) 619 942 IPR011009 -
Vifa1g01234 970 MobiDBLite consensus disorder prediction 356 374 - -
Vifa1g01234 970 CDD PAS 174 263 IPR000014 -
Vifa1g01234 970 ProSitePatterns Protein kinases ATP-binding region signature. 636 659 IPR017441 GO:0005524
Vifa1g01234 970 PANTHER FLIPPASE KINASE 1-RELATED 127 944 - -
Vifa1g01234 970 MobiDBLite consensus disorder prediction 95 148 - -
Vifa1g01234 970 Gene3D PAS domain 418 582 - -
Vifa1g01234 970 ProSiteProfiles PAC domain profile. 221 275 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01234 Vifa-Chr1 200196178 200203396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01234 9 970 AGC Kinase Gene Family AT3G45780 67.359 0.0 1313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa1g01234 Pkinase 3.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01234 K20715 - gmx:100817565 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01234 1 200196178 200203396 Vifa1g01234 1 200196178 200203396 ECH
Vifa1g01234 1 200196178 200203396 Vifa6g00676 6 249954047 249969887 PCT