Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01230 ATGTGCAGCGGTATGGGGTATGAGAATGAGAATGAAGAAGGGCGGCGTCTGGATGTTTATTCTTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGTTTCAAAGACGCGGTCGAAAACGAGGGTTGTGATGTTGATGAGGCTGGCTTGTGGTATGGGAGAAGGGTTGGTTCGAACAAATTGGGTTATGTTGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGCTTGAATGTTTCGGCGTATATTCTTGGAACAGGTTGTGTTGATGTTAATCGGGGTAGTGGATCAGATGGCGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCGGCCGAGATTGTTAAGCTTTTGCTTGATGCATCGGCGGATGCTGGTGCTGTAGATGTGAACGGTAAACGGCCCGTTGACTTGATTCTCTCGGTTGGGAAGTCTATGTTTGATTCGAGGAAGAGGATGCTGCAAGTTCTTCTTGAGGGTACGGGCGGCGCTGAGCAGACATGTCTTATATTTCCGGAGACAATTGACGGTTTTGATGAATATGAAAGGCAAGCTTTAAACTCGCCTCGTTTTTCGAAAGATTATCTTGTTGATCTTTCTCTTCCTGACATAAAGAATGGAATATATAGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCGTATTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCGGGGGAAAACGCAAGGCGACGCGATCCGAAGAAATATCCTTATAGCTGTGTTCCTTGTCCTGAGTTTCGCAAAGGATCGTGTAGCAAAGGGGATTCGTGTGATTATGCTCATGGTATTTTTGAGTGCTGGCTTCATCCTGCGCAATATCGGACACGTCTTTGCAAGGATGAGGGCTCGTGCACAAGAAGAGTTTGCTTCTTTGCTCACAGGGTTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCATCTCCAAGATCATATTATAGCAGTGCTTCTGCATTAGAGATGAGTTCTCTTAGCCCTACCACGCTTGGTTCTCCGTCTGGTTTGATGCCGCCCTCGTCAACACCGCCTTTGACTCCATCCGGAGCGTCTTCTCCTGTTTCTGCGGCAGCTATGTGGCAGGTACAATCTAATGTTTCGGTCCCTACCCTTCAGCTTCCCCGAAGCAGGTTGAATTCGGCAATAACTGCTAGAGACATTGATTCAGATATTGCAATGCTTAGGGCTGAAACTCAGCGGCGAAACCAGCAACTAATGATGGATGAGATATCCGGTCTTTCCTCGCCTTCCAACTGGAAAAATTCCATGCCTAACAGTTCATCTTTTCCGGTTTCTTTGAACGATCATACTACTGGCGAACTAAATAAGTTTTCGGGTGTGAAGCCTACTAACCTCGAAAACATTTTCGGATCACTTGATCCATCAATATTGCATAAATTCCATGGAATGTCACTTGAAGCTGCAGGAACTCAGTTACAATCTCCAACCGGAATCCCAATGCGTCCAAATATGAATCAGCAGAACTACTCTTCCAGTGTGATTGGATCCCCGACTAGATTTGATCTTTCCGGGGAGTTATCTGCAGCGGCTTTGAATTCAAGAGCTGCCGCCTTTTCCAGGAAGAGCCAGAGCTTTATCGAACGCAGCATGGCAAACCGTCATTCCGAGCTTCTTTCTCCTGTCAATCCTTACGCCTTTTCCAACTGGGGATCACCCGACGGAAAACTGGATTGGACCATACAAGGTGAAGAACTTAACAAGCTGAGGAAATCGTCTTCTTTTGGATTTCGAAGCAGCAATACTCCTTTAACTACACCGGAAAATGACAATGAACCAGACGTCTCTTGGGTTAATTCGCTTGTGAAGGACGCTACCCCGCAGGAATCTAGCCGGATTAGCGATGAAAATCAGAAACGGAAACTGCAATACAATCTTAACAACGGAACAGACGCGATTCCAGCTTGGTTGGAGCAATTGTACAAGGATCAAGAACAAACTGTGCATTGA 2034 0.4617 MCSGMGYENENEEGRRLDVYSLLEFSAADDVIGFKDAVENEGCDVDEAGLWYGRRVGSNKLGYVERTPLMVAAMFGSLNVSAYILGTGCVDVNRGSGSDGATALHCAVAGGSAASAEIVKLLLDASADAGAVDVNGKRPVDLILSVGKSMFDSRKRMLQVLLEGTGGAEQTCLIFPETIDGFDEYERQALNSPRFSKDYLVDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDEGSCTRRVCFFAHRVEELRPLYASTGSAIPSPRSYYSSASALEMSSLSPTTLGSPSGLMPPSSTPPLTPSGASSPVSAAAMWQVQSNVSVPTLQLPRSRLNSAITARDIDSDIAMLRAETQRRNQQLMMDEISGLSSPSNWKNSMPNSSSFPVSLNDHTTGELNKFSGVKPTNLENIFGSLDPSILHKFHGMSLEAAGTQLQSPTGIPMRPNMNQQNYSSSVIGSPTRFDLSGELSAAALNSRAAAFSRKSQSFIERSMANRHSELLSPVNPYAFSNWGSPDGKLDWTIQGEELNKLRKSSSFGFRSSNTPLTTPENDNEPDVSWVNSLVKDATPQESSRISDENQKRKLQYNLNNGTDAIPAWLEQLYKDQEQTVH 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01230 677 SMART ANK_2a 64 94 IPR002110 GO:0005515
Vifa1g01230 677 SMART ANK_2a 99 131 IPR002110 GO:0005515
Vifa1g01230 677 ProSiteProfiles Ankyrin repeat profile. 99 134 IPR002110 GO:0005515
Vifa1g01230 677 FunFam Zinc finger CCCH domain-containing protein 66 215 283 - -
Vifa1g01230 677 MobiDBLite consensus disorder prediction 601 623 - -
Vifa1g01230 677 SUPERFAMILY Ankyrin repeat 54 145 IPR036770 -
Vifa1g01230 677 Gene3D - 257 320 - -
Vifa1g01230 677 Gene3D - 19 167 IPR036770 -
Vifa1g01230 677 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Vifa1g01230 677 PANTHER UNKEMPT FAMILY MEMBER 24 632 IPR045234 -
Vifa1g01230 677 ProSiteProfiles Ankyrin repeat region circular profile. 99 133 - -
Vifa1g01230 677 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Vifa1g01230 677 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Vifa1g01230 677 Pfam Ankyrin repeats (3 copies) 59 130 IPR002110 GO:0005515
Vifa1g01230 677 MobiDBLite consensus disorder prediction 347 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01230 Vifa-Chr1 199899716 199901749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01230 21 672 C2H2 Transcription Factor Family AT5G12850 38.889 7.26e-138 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g01230 Ank_2 4.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01230 - - aprc:113846970 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01230 1 199899716 199901749 Vifa1g01230 1 199899716 199901749 ECH