Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01217 ATGCAGGCGGCATCGGTTTACGTTCGAGAGATGTTTGCTGTAACAGAGGCAGTTAAAAAGTGGCGTCAGTACTTAATTGGTCAACAGTTTCACATACATACAGACCAAAAGAGCCTACGCAACCTATTACTACAGAAAATTCAAACTCCTGAGCAACAGAAGTGGGCTGCAAAGTTACAAGGTTTTAACTTCGAAATATTTTACAAACCTGGCAAGACAAATGTTGTGGCTGATGCTCTGAGTCGGAAGTATTCCTCGGATCCACCGCGTGGTGTAAGAAAACTTTGCACTTTGAAACTTCTTAGTGCTTCTAAAGTTGAGATGTTTGCTCCTATTAGAAAAGATGAGTTGGATGTTTTGGTAAAATCTTTAAAGAAAGCTGCTTTGGTGGGTGAGGCTGTGAATGTTAGTGATGTTGTACAGACTTTGATTGAAGATATAGTGTTTAAGATGATATTGGGTAGGAGTAAATATCAACAGTTTGACATGAAGATGATTGTTAGACAAACAATGATTTTATTTGGAGCTTTCAATCTTGCTGATTATGTTACTTGGATGGGCTATTTTGATCTTCAGGGAATTACACGAGCTTGCAAGAAAACAAGTAAAGAACTAGATAAATTGTTGGAGGTGATAGTAACCGACCATGAACAAGCTATTAATGTAGACACCCCTCATCATGAACAAGATTTTGTAGACACGCTTCTTTCAACTATGCATCAAACTGTGGATTTAGAAAATGAACAAAATAATGTTATCAATCGTACTGACATCAAGGCAGTATTACTAGACTTGACATTAGCTGGAATTGATACATCGACTTCCGTAGTTGAGTGGGCGTTATCTGAACTTTTAAGGAATTCAAGAGTGATGAAAAATCTTCAAGATGAAATACAAAATGAAATAGGGTGTATGAGAATGATTGAAGAGAAAGATTTGAAGAAGTTAAGTTACTTAGATATGGTGGTCGATGAGATATTAAGACTTTATCCCGTTGGACCTTTACTAGTCCCTCGTGAATGTAGAGAGAATATAACAATTGATGGTTATTTTATTGAGAAAAAATCGCGTGTTATTGTAAATGCATGGGCAATAGGGAGAGATCCTGATGTTTGGTCACAAAACGCAGAAGAATTCTACCCTGAAAGATTTATTGACAAGAAAATGAATTTTCATGGACAAGAGTTTGAGTGTATACCATTCGGTTCTGGTCGGAGACGTTGTCCAGGAATTCATTTTGGTTTGACTACGGTAAAACTGGTTTTAGCTCAATTGGTGCATTGTTTTAATTGGGAACTTCCACATGATATTACACCTTCAAATTTGAACATGGAAGAGAAATTTGGACTCACTATGCCTAGAGCTCACCACCTGTACACAATACCCCGTTATCGTTTAGTAACTAATTAA 1410 0.3702 MQAASVYVREMFAVTEAVKKWRQYLIGQQFHIHTDQKSLRNLLLQKIQTPEQQKWAAKLQGFNFEIFYKPGKTNVVADALSRKYSSDPPRGVRKLCTLKLLSASKVEMFAPIRKDELDVLVKSLKKAALVGEAVNVSDVVQTLIEDIVFKMILGRSKYQQFDMKMIVRQTMILFGAFNLADYVTWMGYFDLQGITRACKKTSKELDKLLEVIVTDHEQAINVDTPHHEQDFVDTLLSTMHQTVDLENEQNNVINRTDIKAVLLDLTLAGIDTSTSVVEWALSELLRNSRVMKNLQDEIQNEIGCMRMIEEKDLKKLSYLDMVVDEILRLYPVGPLLVPRECRENITIDGYFIEKKSRVIVNAWAIGRDPDVWSQNAEEFYPERFIDKKMNFHGQEFECIPFGSGRRRCPGIHFGLTTVKLVLAQLVHCFNWELPHDITPSNLNMEEKFGLTMPRAHHLYTIPRYRLVTN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01217 469 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 401 410 IPR017972 GO:0005506|GO:0016705
Vifa1g01217 469 Pfam RNase H-like domain found in reverse transcriptase 5 62 IPR041373 -
Vifa1g01217 469 Gene3D Cytochrome P450 21 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS P450 superfamily signature 268 285 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS P450 superfamily signature 321 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS P450 superfamily signature 399 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 SUPERFAMILY Cytochrome P450 86 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PANTHER CYTOCHROME P450 93A3-LIKE 90 466 - -
Vifa1g01217 469 FunFam Uncharacterized protein 123 461 - -
Vifa1g01217 469 SUPERFAMILY DNA/RNA polymerases 4 69 IPR043502 -
Vifa1g01217 469 CDD RNase_HI_RT_Ty3 5 84 - -
Vifa1g01217 469 Pfam Cytochrome P450 90 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS E-class P450 group I signature 398 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS E-class P450 group I signature 362 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS E-class P450 group I signature 320 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS E-class P450 group I signature 277 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS E-class P450 group I signature 257 274 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01217 469 PRINTS E-class P450 group I signature 408 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01217 Vifa-Chr1 197883614 197887556 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01217 90 467 Monolignol Biosynthesis Gene Families AT4G36220 38.718 4.93e-89 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01217 - - psat:127113357 540.806