Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01216 ATGTATGCACAATCTAATTCCAACAATATCCCATTATTCTCAAACTCCATCACTGATTTCACTGAGTTTGACTCGTTCCAAGACACTCTCTCTCAACTCAATAACTCGGATTTTAGTAGCTGCTATAGCAGCTATGCTGGATCACCTTCACCAAATACTCCCATCTTCATGCAAAGAAGCATTAGCAGCCATTCCCTTCACCACAACAATGGGACCCACCGTCATCCCCTCTCCGCTTTTTTCGCTGAATTGCTCGACTCTGAAGACACTCCCGTGCGAAAAGTTTATAGCACGGGAGATCTCCAGAGGATTAAGAGAATGCAACATAATCATCATTATCATCATTTGGATAGTCCATTGTCTAGTGAAAGTAGTATGATCATAGAAGGTATGAACAGAGTTTGTCCCTATAGTCCGGAAGAGAAGAAACTCAGAATTGAAAGATACAAAAGAAAGAGGAATCAAAGAAACTTCAACAAGAAAATTAAGTATGTTTGTAGGAAGACATTGGCAGATAGGAGGCCGCGAATTAGAGGACGGTTTGCGAGGAACGATGAAATCGATAAGAGCACTAGTGCTGTTCAGTGGAGTCACATTGGTGGTGGAGAGGAAGAAGATGAAGAAGATGAGAATTGGATTCATGTCTTTGATTCCATAGTTGCTGCAAATCTTGTTCATGATGAGTTTCAAGGAAGTTCATCATTTGGCCTATTATATTAG 720 0.4069 MYAQSNSNNIPLFSNSITDFTEFDSFQDTLSQLNNSDFSSCYSSYAGSPSPNTPIFMQRSISSHSLHHNNGTHRHPLSAFFAELLDSEDTPVRKVYSTGDLQRIKRMQHNHHYHHLDSPLSSESSMIIEGMNRVCPYSPEEKKLRIERYKRKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNDEIDKSTSAVQWSHIGGGEEEDEEDENWIHVFDSIVAANLVHDEFQGSSSFGLLY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01216 239 ProSiteProfiles CCT domain profile. 142 184 IPR010402 GO:0005515
Vifa1g01216 239 Pfam CCT motif 144 184 IPR010402 GO:0005515
Vifa1g01216 239 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 37 194 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01216 Vifa-Chr1 197867750 197868922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01216 130 202 C2C2-CO-like Transcription Factor Family AT5G24930 39.726 8.40e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01216 CCT 5.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01216 - - gmx:100820236 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01216 1 197867750 197868922 Vifa1g01216 1 197867750 197868922 ECH
Vifa1g01216 1 197867750 197868922 Vifa6g00679 6 250943116 250944279 PCT