Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01214 ATGTCTTCTGCAACAATACTTTCTTTCCTTCTCTTCACTTTCACATTCCTTTTATTCAAACTTTTCTTGCATCCAAAACAAAATACCTTAAATCATAAGAAGCCACCAGGTCCACCAACACTACCGATAATCGGAAACCTTCACTTGTTAGGCAAACTTCCACATCGAGCACTTGAAACACTCTCTAAAAAATATGGCCCAATCATGTCTTTACAACTAGGGTTTGCTTTTTCTGAGTATGGTCCTTATTGGCGTAGCGTAAGAAAACTTTGCACTTTGAAACTTCTTAGTGCTTCTAAAGTTGAGATGTTTGCTCCTATTAGAAAAGATGAGTTGGATGTTTTGGTAAAATCTTTAAAGAAAGCTGCTTTGGTGGGTGAGGCTGTGAATGTTAGTGATGTTGTAGAGACTTTGATTGAAGATATAGTGTATAAGATGATATTGGGTAGGAGTAAATATCAACAGTTTGACTTGAAGAGGATTGTTAGACAAACAATGATTTTATTTGGAGCTTTCAATCTTGCTGATTATGTTACTTGGATGGGCTATTTTGATCTTCAGGGAATTACACGAGCTTGCAAGAAAACAAGTAAAGAACTAGATGAAGTGTTGGAGGTGATAGTAACCGACCATGAACAAGCTATTAATGTAGACACCCCTCATCATGAACAAGATTTTGTAGACACGCTTCTTTCAACTATGCATCAAACTGTGGATTTAGAAAATGAACAAAATAATGTTATCAATCGTACTAACATCAAGGCAGCATTACTAGACTTGATATTAGCTGGAATTGATACATCGGCTACCGTAGTTGAGTGGGCGTTATCTGAACTTTTAAGGAATTCAAGAGTGATGAAAAATCTTCAAGATGAAATACAAAATGAAATAGGGTGTATGAGAATGATTGAAGAGAAAGATTTGAAGAAGTTAAGTTACTTAGATATGGTGGTCGATGAGATATTAAGACTTTATCCCGTTGGACCTTTACTAATCCCTCGTGAATGTAGAGAGAATATAACCATTGATGGTTATTTTATTGAGAAAAAATCGCGTGTTATTGTAAATGCATGGGCAATAGGGAGAGATCCTGATGTTTGGTCACAAAACGCCGAAGAATTTTACCCTGAAAGATTTATTGACAAGAAAATGAATTTTCATGGACAAGAGTTTGAGTGTATACCATTCGGTTCTGGTCGGAGACGTTGTCCAGGAATTCATTTTGGTTTGATTACGGTAAAATTGGTTATAGCTCAATTGGTGCATTGTTTTAATTGGGAACTTCCACATGATATTACACCTTCAAATTTGAACATGGAAGAGAAATTTGGACTCACTATACCTAGAGCTCACCACTTGTACGCAATACCCCATTATCGTTTAGTAACTAATTAG 1395 0.3599 MSSATILSFLLFTFTFLLFKLFLHPKQNTLNHKKPPGPPTLPIIGNLHLLGKLPHRALETLSKKYGPIMSLQLGFAFSEYGPYWRSVRKLCTLKLLSASKVEMFAPIRKDELDVLVKSLKKAALVGEAVNVSDVVETLIEDIVYKMILGRSKYQQFDLKRIVRQTMILFGAFNLADYVTWMGYFDLQGITRACKKTSKELDEVLEVIVTDHEQAINVDTPHHEQDFVDTLLSTMHQTVDLENEQNNVINRTNIKAALLDLILAGIDTSATVVEWALSELLRNSRVMKNLQDEIQNEIGCMRMIEEKDLKKLSYLDMVVDEILRLYPVGPLLIPRECRENITIDGYFIEKKSRVIVNAWAIGRDPDVWSQNAEEFYPERFIDKKMNFHGQEFECIPFGSGRRRCPGIHFGLITVKLVIAQLVHCFNWELPHDITPSNLNMEEKFGLTIPRAHHLYAIPHYRLVTN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01214 464 Pfam Cytochrome P450 75 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 SUPERFAMILY Cytochrome P450 35 460 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 CDD CYP71-like 64 453 - -
Vifa1g01214 464 PRINTS P450 superfamily signature 316 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS P450 superfamily signature 394 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS P450 superfamily signature 263 280 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PANTHER CYTOCHROME P450 93A3-LIKE 13 75 - -
Vifa1g01214 464 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 396 405 IPR017972 GO:0005506|GO:0016705
Vifa1g01214 464 Gene3D Cytochrome P450 25 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 FunFam Uncharacterized protein 118 456 - -
Vifa1g01214 464 PRINTS E-class P450 group I signature 315 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS E-class P450 group I signature 393 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS E-class P450 group I signature 403 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS E-class P450 group I signature 357 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS E-class P450 group I signature 252 269 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g01214 464 PRINTS E-class P450 group I signature 272 298 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01214 Vifa-Chr1 197846987 197848639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01214 42 462 Monolignol Biosynthesis Gene Families AT4G36220 37.474 4.48e-106 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01214 - - psat:127113357 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01214 1 197846987 197848639 Vifa1g01214 1 197846987 197848639 ECH