Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01212 ATGCCTTTTTATGTGAAGGATGTTGCAAACATATATATTCTGGGAAATGACCATGCTTTGACTAATGGAAGATATTGTAAGTTGGAGACAACATGTGAAAATTTCGGCAACAGTTTTGAGAAGTGCACCGTATATAAAGGAACATTGTACACTGGAGTCGATATTGCTGTTGATTCTACTATTGTTACTTCTATTGAGGATTGGTCAAAGAACATGGATATAGCCTACAGAAGAAAGATTGCTGCTTTATCCCGTGTTAACCATAACAACATTACCAATCTCATTGGTTGTTGTGACGAAGACGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCGAGCGGAAGCTTATATGAGCATCTACATGTTAAGGATGTTGAACATCTTGATTGGAGTGAAAGAATGAGCTGCGCCTTTGTCTAA 426 0.3826 MPFYVKDVANIYILGNDHALTNGRYCKLETTCENFGNSFEKCTVYKGTLYTGVDIAVDSTIVTSIEDWSKNMDIAYRRKIAALSRVNHNNITNLIGCCDEDEPFTRMMVFEYAPSGSLYEHLHVKDVEHLDWSERMSCAFV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01212 141 Gene3D Transferase(Phosphotransferase) domain 1 23 140 - -
Vifa1g01212 141 SUPERFAMILY Protein kinase-like (PK-like) 43 139 IPR011009 -
Vifa1g01212 141 Pfam Protein tyrosine and serine/threonine kinase 43 139 IPR001245 GO:0004672|GO:0006468
Vifa1g01212 141 PANTHER PROTEIN MALE DISCOVERER 2 27 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01212 Vifa-Chr1 197717782 197718677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01212 44 139 Receptor kinase-like Gene Family AT3G59420 39.394 1.74e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa1g01212 PK_Tyr_Ser-Thr 2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01212 - - gmx:100808098 180.644