Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01209 ATGGCTAAAGTGGCTGATTTTGGATTGTCAAAGACCGGTCCTGAACTTGATCAAACACATGTGAGCACGGCCGTCAAGGGGAGTTTCGGGTACCTTGATCCAGAATATTTCAGGAGGCAGCAACTGACTGAGAAGTCCGATGTGTATTCCTTTGGGGTAGTTTTGTTTGAAGTTCTTTGTGCGAGGCCTGTTATAGATCCGTCACTTCCTAGGGAAAAGGTAAACTTGGCAGAATGGGCGATGAAATTTCTTAAAAAAGGACAGTTGCAACAAATCATCGATACTGCACTTGCAGGGAAAATCAAACCAGAATCTCTTAGGAAGTTTGGCGAAACTGCTGAAAAATGTTTGGCTGACTATGGTGTTGATAGACCTTCAATGGGAGATGTCTTGTGGAATTTAGAGTATGCTCTACAACTTCAAGAAGCTGAGGTTCAAGGTGATCCTGAAGAAAACAGTACAAACATGATCGGCGAACTCTCTCCACAAGTCAACAACTTCCACCAAGACGCAAATGTGTCTTCTGCTTCTGCTGTACAGTTTGAAACTTCAACTGTAGATGATCTTTCTGGTGTTTCTATGAGTAGAGTATTTTCACAGCTGGTGAAGTCCGAGGGTAGATGA 624 0.4311 MAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREKVNLAEWAMKFLKKGQLQQIIDTALAGKIKPESLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAEVQGDPEENSTNMIGELSPQVNNFHQDANVSSASAVQFETSTVDDLSGVSMSRVFSQLVKSEGR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01209 207 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
Vifa1g01209 207 ProSiteProfiles Protein kinase domain profile. 1 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01209 207 SUPERFAMILY Protein kinase-like (PK-like) 2 132 IPR011009 -
Vifa1g01209 207 PANTHER OS07G0166700 PROTEIN 2 141 IPR045272 GO:0004714|GO:0006468
Vifa1g01209 207 Pfam Protein tyrosine and serine/threonine kinase 2 71 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01209 Vifa-Chr1 197198606 197199229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01209 1 207 Receptor kinase-like Gene Family AT3G46290 82.775 1.20e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g01209 PK_Tyr_Ser-Thr 8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01209 - - gmx:100305416 365.155