Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01208 ATGATGGATTGGAGAAAACTTGGTTTGGTTATCTGTGCTTTGAATCTCTTGCCTTTGGTATGTTTTTGTGCAACTTTTGTTCCAGCTGATAATTACCTTATAGATTGTGGATCAACTACACCTACTTCAGTAGGTAACCGCAATTTCACTTCAGATACTTTATCTAAGAAGTTACTTACAACTCAGCGAGAGATTCTTGCTAGTACTTCTGCAAATTCAGTTTCTTCTAAAGATGATGAAGCACCACTTTATAAAACTGCAAGAGTTTTTACTGGATCTTCAAAGTACACTTTTCCTATTAACCAAAAGGGAAGACACTGGATCCGGTTTTATTTTTTTCCATTTATTTATGATAAATATAATCTGAATGCTGCGAAATTCGTTGTATCGACACAAACCATTGTGCTTATTAGTGGTTTAACTATGCAGAAGAATCCTTTTATGAAGGAATATTCTATCAATGTTACCACAGATATCCTTGAGATTACTTTTAGGCCTTTGGATAGTTCAGTTGCTTTTGTGAATGCAATTGAGGTTGTTTCTGTTCCTGATGATCTCATTGCTGATGATGCTTTGAACTTGAATCCGTCGATGACGTATTCTGGTTTGGGGACTCAGGCTTTGGAGACTGTTTGGAGGGTTAACATGGGTGGTCCAGTTGTTACGTCTGGAGTGGACCCTCTTCAGAGAACTTGGGTGACGGATCAAAAGTTTCTTCGAACATCGAACCTTGCCAATGATGTTTCGAATATTCCTGCTGTTAAGTATACTTTTGGAGGGCCAACACAATTCACTGCTCCGCCTAGTGTTTATGGTACTGCTGCGGAGATGAACACAAACACGAGTACCGGTGGTGATACTAATATTAATTTCAATGTGACGTGGCAATTTGATGTGGAGCCTGGATTTCAATACCTTGTTCGAGCTCACTTTTGTGATATAGTCAGCAAAGCTCTCAATTTACTTTACTTCAATGTTTATATTGACTCAATGGCAGCTGCTAAGGAACTTGATCTTAGTTCTAAAGGAAATAATGTTTTGGGTGTTCCGTATTTTACGGATTTGGTTACGCCGATAGCTGACAGCAATAAACTAAATGTAAGTATTGGCCCTTCCACTTCATATAAGGACAACCCTAATGCTATTTTGAATGGGCTGGAGATCATGAAAATGAACAATTCTATTGGCAGTCTCAGTGCAAATGCGGCGTCTGGTGCTGGAGGTGATTCCTCTGGTTCGAGTTCTAGTCATGTTGGTCTGATAGCTGGTGTGAGTGTTGGGGTAGTGAGTGCAGTGGTCTTGGCCGGAGTTTGCTGCATACTGTGTAGGAAAAGAAGGAGGTTGGCACAACAAAGGCAGTCAAAGACATGGATTCCTTTGTCCGTCAACGATACACATACGATGGGAAGTAAATATTCCAATGGCACAACGATAAGCGCTGCTTCAAACTTTGAGTACCGTGTTCCTTTTGCGGAAGTTAAGGAGGGTACAAATAATTTTGATGAGAGTTGGGTTATTGGGGTTGGTGGTTTTGGGAAAGTCTACAAGGGAGAGTTAAGAGATGGCAGGAAAGTGGCGGTGAAGAGGGGAAATCCATTGTCGCAGCAGGGGATTGCTGAATTTAGAACGGAAATTGAAATGTTGTCTCAATTTCGTCATCGCCATTTGGTGTCTTTGATTGGTTATTGTGATGAAAATAATGAAATGATCCTGATATATGAATACATGGAAAATGGAACTCTCAAAAGTCATTTATATGGTTCGGGGCTCCCGAGCTTAAGTTGGAAGCAGAGACTTGAGATTTGCATTGGATCTGCTAGAGGACTTCATTACCTTCATACCGGCTATGCTAAAGCAGTCATTCACCGTGATGTAAAATCGGCAAATATCTTACTTGACGAGAACCTGATGGCTAAAGTGGCTGATTTTGGATTGTCAAAGACCGGTCCTGAACTTGATCAAACACATGTGAGCACGGCCGTCAAGGGGAGTTTCGGGTACCTTGATCCAGAATATTTCAGGAGGCAGCAACTGACTGAGAAGTCCGATGTGTATTCCTTTGGGGTAGTTTTGTTTGAAGTTCTTTGTGCGAGGCCTGTTATAGATCCGTCACTTCCTAGGGAAAAGGTAAACTTGGCAGAATGGGCGATGAAATTTCTTAAAAAAGGACAGTTGCAACAAATCATCGATACTGCACTTGCAGGGAAAATCAAACCAGAATCTCTTAGGAAGTTTGGCGAAACTGCTGAAAAATGTTTGGCTGACTATGGTGTTGATAGACCTTCAATGGGAGATGTCTTGTGGAATTTAGAGTATGCTCTACAACTTCAAGAAGCTGAGGTTCAAGGTGATCCTGAAGAAAACAGTACAAACATGATCGGCGAACTCTCTCCACAAGTCAACAACTTCCACCAAGACGCAAATGTGTCTTCTGCTTCTGCTGTACAGTTTGAAACTTCAACTGTAGATGATCTTTCTGGTGTTTCTATGAGTAGAGTATTTTCACAGCTGGTGAAGTCCGAGGGTAGATGA 2532 0.4111 MMDWRKLGLVICALNLLPLVCFCATFVPADNYLIDCGSTTPTSVGNRNFTSDTLSKKLLTTQREILASTSANSVSSKDDEAPLYKTARVFTGSSKYTFPINQKGRHWIRFYFFPFIYDKYNLNAAKFVVSTQTIVLISGLTMQKNPFMKEYSINVTTDILEITFRPLDSSVAFVNAIEVVSVPDDLIADDALNLNPSMTYSGLGTQALETVWRVNMGGPVVTSGVDPLQRTWVTDQKFLRTSNLANDVSNIPAVKYTFGGPTQFTAPPSVYGTAAEMNTNTSTGGDTNINFNVTWQFDVEPGFQYLVRAHFCDIVSKALNLLYFNVYIDSMAAAKELDLSSKGNNVLGVPYFTDLVTPIADSNKLNVSIGPSTSYKDNPNAILNGLEIMKMNNSIGSLSANAASGAGGDSSGSSSSHVGLIAGVSVGVVSAVVLAGVCCILCRKRRRLAQQRQSKTWIPLSVNDTHTMGSKYSNGTTISAASNFEYRVPFAEVKEGTNNFDESWVIGVGGFGKVYKGELRDGRKVAVKRGNPLSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTLKSHLYGSGLPSLSWKQRLEICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREKVNLAEWAMKFLKKGQLQQIIDTALAGKIKPESLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAEVQGDPEENSTNMIGELSPQVNNFHQDANVSSASAVQFETSTVDDLSGVSMSRVFSQLVKSEGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01208 843 FunFam Receptor-like protein kinase FERONIA 576 791 - -
Vifa1g01208 843 CDD STKc_IRAK 506 771 - -
Vifa1g01208 843 FunFam receptor-like protein kinase FERONIA 464 575 - -
Vifa1g01208 843 SMART serkin_6 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01208 843 Gene3D Phosphorylase Kinase; domain 1 461 575 - -
Vifa1g01208 843 Gene3D - 31 183 - -
Vifa1g01208 843 Gene3D - 206 393 - -
Vifa1g01208 843 PANTHER OS07G0166700 PROTEIN 487 777 IPR045272 GO:0004714|GO:0006468
Vifa1g01208 843 Pfam Malectin-like domain 34 391 IPR024788 -
Vifa1g01208 843 Pfam Protein tyrosine and serine/threonine kinase 505 699 IPR001245 GO:0004672|GO:0006468
Vifa1g01208 843 SUPERFAMILY Protein kinase-like (PK-like) 476 771 IPR011009 -
Vifa1g01208 843 ProSiteProfiles Protein kinase domain profile. 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01208 843 FunFam Putative receptor-like protein kinase 31 183 - -
Vifa1g01208 843 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vifa1g01208 843 FunFam Receptor-like protein kinase FERONIA 207 393 - -
Vifa1g01208 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Vifa1g01208 843 Gene3D Transferase(Phosphotransferase) domain 1 576 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01208 Vifa-Chr1 197196698 197199229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01208 19 843 Receptor kinase-like Gene Family AT3G46290 65.621 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g01208 Malectin_like 1.7e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01208 - - gmx:100305416 1219.91