Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01204 ATGGTTTTACTTCGACAGGGCATGCAGCATGTTCGAAATTTCTATAACTCAGAAACTCAAATGTTAAGAACCAACTTTCCACCATCATTCATCTCTCAAACATACAAAAGTAGTATCTCGAAGCAAAGATCAAAGGCAGAGAACAAATTACTAGCAGCAAAGAAACATAGTGAAGCAGAAAGGAGGCGCAGAATGCGAATCAATGGTCAATATGACACCCTCCGCAACATCCTCCCCAACCTGATCAAAAAGGACAAGGCATCAATACTAGTGGAGGCTATCAAGCAAGTGTATGAGTTGAAGAAAAAAGCATCAAAACTAGAAGAAAGCCATGGTACCTCAAAGGAGGTCAAGTTTCCTAGTGGGATAGACAGATTGAATTTGGAAAAATGTAATGATGAGGAGGGTTTAGTGAAAGCTACATTAAGCTGTGAAGATAGGCCAGGATTGATGTCATCTATAGCAAGAGCACTTGGGTCAATGAAAGCCAAAGTTGAAAAGGTTGAGATGGTGACAGTTGGAGGAAGAACCAGAAGTGTTTTGTGGGTGCAAGGAGTTGAAAATGAAAGTTTGGGAATGCTTAAAAGTACTTTGAAAATTGTCATGCATAACCCAAGCTTTAAGACGAAGAGGTTTACTCAATAA 645 0.3969 MVLLRQGMQHVRNFYNSETQMLRTNFPPSFISQTYKSSISKQRSKAENKLLAAKKHSEAERRRRMRINGQYDTLRNILPNLIKKDKASILVEAIKQVYELKKKASKLEESHGTSKEVKFPSGIDRLNLEKCNDEEGLVKATLSCEDRPGLMSSIARALGSMKAKVEKVEMVTVGGRTRSVLWVQGVENESLGMLKSTLKIVMHNPSFKTKRFTQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01204 214 Pfam Helix-loop-helix DNA-binding domain 55 95 IPR011598 GO:0046983
Vifa1g01204 214 Pfam ACT domain 141 203 - -
Vifa1g01204 214 SUPERFAMILY ACT-like 139 203 IPR045865 -
Vifa1g01204 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Vifa1g01204 214 Coils Coil 90 110 - -
Vifa1g01204 214 CDD ACT_UUR-ACR-like 141 191 - -
Vifa1g01204 214 Gene3D - 49 119 IPR036638 GO:0046983
Vifa1g01204 214 SMART finulus 57 106 IPR011598 GO:0046983
Vifa1g01204 214 Gene3D - 135 208 - -
Vifa1g01204 214 PANTHER TRANSCRIPTION FACTOR BHLH30 21 207 IPR045847 GO:0003700|GO:0006355
Vifa1g01204 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 111 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01204 Vifa-Chr1 196669232 196670089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01204 39 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 40.541 6.56e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01204 ACT_6 5.8e-05 CL0070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01204 - - gmx:102667782 279.641