Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01195 ATGCCAAAACCTAGGAGCTTCTTTTTCTTCAAACCACCACCACCCAAATCACCACCACAATTGCCACCTTCTTCACCTCATAACCAAACCTTCTCCGACGCAATAGTTGACGAAAACATTGAAACCGCTCAATCTCTCATAACCAAATGGAATTCTATTTCCACATCTTCTAACTATTCCCTGTTCACAAATTCTCCTCAAGAAGCCAAACAGTATCTTAACGCCGTTAAGATGCTACAATACGCTATGATGTACCTCATCGCACGGGATTCCACCTCTCAGAAACTCATCACAGCACAATCGTTAATGAAACTCGCCATGAAGAAACTCGAAACTGAATTTTACAGAATACTATCACAAAATACAAACCGTTACGGCTCCAAATCACTCTCAGTTGAATCCACAGTGGATCACCGGAGAAGTTTCTCCGAAATCGACGATGAATACTCTGACGAGGACTCATCATCACTAACGACTCTCGAATCAAATTTGAAAGCTATTGCAGAATGTATGATCTTCACCGGTTACAGCAAAGAATGTGTAAATGTTTACTCGATTGTGAGAAAATCGATAATGGATGAAGCTTTGTTCAATCTCGGAGTTGAGAAGCTGAGTTTCTCTCAGGTTCAGAAAATGGATTGGGAGTTCCTTGAATGGAAGATCAAGTGTTGGATAAACGCCGTTAAAGTTTCCGTTAACACTCTCTTTCCCGGTGAGAGAGTGCTCTGCAATTACATTTTCGATACGCCGGAGAGGAATATTGCATTTTCATGTTTCACTGAGATTTGTAAAGAAGGCGCTATAATGCTGTTTGGATTCCCGGAAAACGTTGCAAAGTGTAAGAATACGCCGGAGAAAATGTTCAGAGTATTGGATTTGTATGAAGCAATCTCCGATAACTGGCAACTAATTGAATCGTTATTTGCATCGGATTCAACCTCGCCGATTTGTGCTCAGGTGATCGCTTCAGAGCTGAGACTCGCTGAATCCGTTAGAACAATGTTATCGGATTTTGAAACGGCGATTCAGAAGGAAAATTCAAAGATTCCGGTACCTGGCGGAGGGATTCATCCTCTCACGCGCTACGTCATGAACTACATTTCACTTCTCAACGATTACAGCGACGCGCTCTCTGATATCTTCTCCGATTGGCCACAAACTCCGTTACCAGAATCTTACTACAAAATTCCATCTCACGACGAGGCTAATCCACCGTCGGAGATATCAAAACGTCTCTCATGGTTGATTCTAACGATTCTCTGCAAACTCGACGGAAAATCGGAACTATACAAAGACATTGCACTCTCTTACCTTTTTCTCGCGAATAACATGCAATACGTCGTCGTTAAAGTGCGTAATTCAAATCTAGGGTTTATTCTCGGCGAGGATTGGTTAATCAAGCACGAGATGAAGGTGAAGGAGTATGTTTCCAAATACGAGCGCATGTCGTGGAGCAAAGTTCTATCGTCGATTCCGGAAAATCCAACGGCGGAGAACGCGAGTGATATTTTCCAAAATTTCAATGTGGCGTTTGAAGAAACGTGTAGAACACAGTGTTTGTGGGTCGTACCCGACCCGAGAATGCGAGATGAAATAAAAGCGTCGTTGGAGTTAAAGGTTGTTTGTAGGTATAGGGAATTTTACATGAAATATCGGGTCGGGTTGGATTCGGTGGTTAGTTATTCGCCCGAAGATTTGACGGACTATCTATCGGAAATTTTGTGTGGTAGCGTTTTGTCGCATTCCACTACTGACCATTTCAAACGCTTCAAAGTTTAG 1779 0.425 MPKPRSFFFFKPPPPKSPPQLPPSSPHNQTFSDAIVDENIETAQSLITKWNSISTSSNYSLFTNSPQEAKQYLNAVKMLQYAMMYLIARDSTSQKLITAQSLMKLAMKKLETEFYRILSQNTNRYGSKSLSVESTVDHRRSFSEIDDEYSDEDSSSLTTLESNLKAIAECMIFTGYSKECVNVYSIVRKSIMDEALFNLGVEKLSFSQVQKMDWEFLEWKIKCWINAVKVSVNTLFPGERVLCNYIFDTPERNIAFSCFTEICKEGAIMLFGFPENVAKCKNTPEKMFRVLDLYEAISDNWQLIESLFASDSTSPICAQVIASELRLAESVRTMLSDFETAIQKENSKIPVPGGGIHPLTRYVMNYISLLNDYSDALSDIFSDWPQTPLPESYYKIPSHDEANPPSEISKRLSWLILTILCKLDGKSELYKDIALSYLFLANNMQYVVVKVRNSNLGFILGEDWLIKHEMKVKEYVSKYERMSWSKVLSSIPENPTAENASDIFQNFNVAFEETCRTQCLWVVPDPRMRDEIKASLELKVVCRYREFYMKYRVGLDSVVSYSPEDLTDYLSEILCGSVLSHSTTDHFKRFKV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01195 592 Gene3D Exocyst complex component Exo70 46 582 - -
Vifa1g01195 592 PANTHER EXOCYST COMPLEX PROTEIN EXO70 27 567 IPR004140 GO:0000145|GO:0006887
Vifa1g01195 592 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g01195 592 SUPERFAMILY Cullin repeat-like 49 573 IPR016159 -
Vifa1g01195 592 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g01195 592 Pfam Exo70 exocyst complex subunit 223 572 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01195 Vifa-Chr1 194092556 194094334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01195 8 577 EXO70 exocyst subunit family AT5G59730 46.053 4.35e-174 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01195 K07195 - gmx:100801773 680.633