Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01191 ATGTTCTCAAACTTTCAACAACAACAACACCACAACCTTTTTCACACCTCTCGTGAATGCCAAACCTCAGAAGAAGATGACAGCCGAGGCAGCGGTGGGCCCGCCACATTAACACCCCACAAACCTTTCTCCGCCATCAGCGGAAGCAGCGACGGTGCTACTATAGAGATTGGCCGTAGGCCCAGAGGCCGTCCGCCTGGCTCCAAGAACAAACCCAAATCCCCACTCATAATTACTCACGAGCCCGAGCCTGCGATGAGCCCACACGTTCTCGAAATTCCAGAAGGTAGTGATATCGTTGAAGCAATATCCCGGTTCAGTAACAGACGAAAAACCGGGTTATGCATATTAACCGGTTCAGGTGCCGTCGCTAACGTTACACTCCGTCAACCTTCTGCTCCTCCAGGCACCACCGTTATTTTTCACGGCCGTTTCAATATTCTCTCCATATCCGCCACGTTCTTAGTCCCGTCAGAATCCTCGCCGCCGATACATAAAGAATTCTCGATCTCCCTCGCCGGACCTCAGGGTCAGATTATCGGAGGGTTTGTCGTTGGGAGGTTGCTAGCTGCCGGTACGGTGTTTGTGATTGCAGCTTCGTTTAACAACCCTAGTTATCACAGGCTACCTTTGGAAGAGGATGTTCGGAATAATACAGTTTCCGGTGGTTGTGATGAGAAGTCGCCGCCCTTGTCCGGTGCTGAGTCATGTATTTATAGCTGTCAACTTCCTTCCGATGTGATTTGGGCTCCAACGCCAAGAACGCATTTCTGA 774 0.509 MFSNFQQQQHHNLFHTSRECQTSEEDDSRGSGGPATLTPHKPFSAISGSSDGATIEIGRRPRGRPPGSKNKPKSPLIITHEPEPAMSPHVLEIPEGSDIVEAISRFSNRRKTGLCILTGSGAVANVTLRQPSAPPGTTVIFHGRFNILSISATFLVPSESSPPIHKEFSISLAGPQGQIIGGFVVGRLLAAGTVFVIAASFNNPSYHRLPLEEDVRNNTVSGGCDEKSPPLSGAESCIYSCQLPSDVIWAPTPRTHF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01191 257 Gene3D - 87 221 - -
Vifa1g01191 257 ProSiteProfiles PPC domain profile profile. 83 222 IPR005175 -
Vifa1g01191 257 CDD DUF296 88 201 IPR005175 -
Vifa1g01191 257 MobiDBLite consensus disorder prediction 1 81 - -
Vifa1g01191 257 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g01191 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 203 IPR005175 -
Vifa1g01191 257 PIRSF ESCAROLA 2 242 IPR014476 GO:0003680
Vifa1g01191 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 213 - -
Vifa1g01191 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 222 IPR014476 GO:0003680
Vifa1g01191 257 FunFam AT-hook motif nuclear-localized protein 87 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01191 Vifa-Chr1 193548746 193549519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01191 44 254 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 56.277 1.30e-84 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01191 - - cam:101500910 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01191 1 193548746 193549519 Vifa1g01191 1 193548746 193549519 ECH
Vifa1g01191 1 193548746 193549519 Vifa2g03030 2 861953287 861954277 PCT