LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01184	ATGAATGGGCCTGACCCATTTTTAAACGAATCAGCCCATTTCACAGGTAGAGCGCATATAACACCGAAAACCCTAATTTTCATACTGTCTGCTTCCATCACCCAGGTTTCAGTTCAGATTCAAACTAGGGTTTTTTCGCCATCAATGGCTCCTAAAGGTGATGTTTCGAAGAAGACTGATCCAAAGGCACAGGCCTTGAAAGCTGCTAAGGCAGTGAAATCAGGGACCGCCATTAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACATTTCACAGGCCAAAGACTTTGTCGAAAGACCGGAACCCTAAATATCCTCGCATCAGTGCTACACCAAGGAATAAGCTTGATCATTATCAGATTTTGAAGTTTCCACTCACTACTGAGTCTGCTATGAAGAAGATTGAAGACAACAACACATTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAAATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACTTTGATCAGGCCCGATGGCACCAAGAAAGCTTATGTTAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGTATTATCTAA	606	0.4191	MNGPDPFLNESAHFTGRAHITPKTLIFILSASITQVSVQIQTRVFSPSMAPKGDVSKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01184	201	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	118	194	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01184	201	Pfam	Ribosomal protein L23	121	183	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01184	201	Hamap	50S ribosomal protein L23 [rplW].	121	201	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01184	201	Pfam	Ribosomal protein L23, N-terminal domain	62	110	IPR005633	-
	Vifa1g01184	201	Gene3D	-	82	201	IPR012677	-
	Vifa1g01184	201	PANTHER	60S RIBOSOMAL PROTEIN L23A	54	201	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01184	201	NCBIfam	50S ribosomal protein L23	125	201	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01184	201	ProSitePatterns	Ribosomal protein L23 signature.	179	194	IPR001014	GO:0019843
	Vifa1g01184	201	FunFam	60S ribosomal protein L23a	80	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01184	Vifa-Chr1	192434764	192436220	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01184	74	201	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	90.625	1.89e-67	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01184	K02893		-	csav:115705011	256.144