Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01183 ATGTCTTATTGGAGTGAAGAAGAAATTTGTTTAGTTCTAGCACTATGTTTTCTAGTATTCCTTGCACTAAGGCAATGGAAATCTTTCAAATGTCTCTTGTGTAAAGCTATCACTACAATTTCATCTTCGAATTCAAATTCACCTACACCCCCTGTAAATCTTCACGAAGAGCAATTTCAAGATGAATCCATTTCACAAAACTTTTCACCACAATTTCAAGGTAGTGAATTGGAATTATCAATTATAAACTCTCTTCCTGTGTATCAATTAAATAAAGAAGATATACAAGAGAGTCTAATTGATGTAGAGTGTGCTATTTGTTTGGGGGAATTTGAAGAAGGAGAATGGTTAAAACTTGTTCCTAATTGTAACCATGGTTTCCATGTTTCGTGCATTGATAAGTGGTTTCAATTGCATTCAAGTTGTCCATTATGTAGATCTCGTATCTATCGTATTCTAGTTGCAAATCATGAGTGTTCTGAGTCGATAAACACGGCTAGAAATTTTGGGGATGGATGA 519 0.343 MSYWSEEEICLVLALCFLVFLALRQWKSFKCLLCKAITTISSSNSNSPTPPVNLHEEQFQDESISQNFSPQFQGSELELSIINSLPVYQLNKEDIQESLIDVECAICLGEFEEGEWLKLVPNCNHGFHVSCIDKWFQLHSSCPLCRSRIYRILVANHECSESINTARNFGDG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01183 172 SMART ring_2 104 145 IPR001841 -
Vifa1g01183 172 Pfam Ring finger domain 103 146 IPR001841 -
Vifa1g01183 172 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vifa1g01183 172 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 149 IPR044675 -
Vifa1g01183 172 CDD RING-H2_EL5-like 103 146 - -
Vifa1g01183 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 151 IPR013083 -
Vifa1g01183 172 SUPERFAMILY RING/U-box 81 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01183 Vifa-Chr1 192433205 192433723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01183 77 167 Rapid Response to Elicitors AT3G16720 47.253 1.85e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01183 - - psat:127087132 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01183 1 192433205 192433723 Vifa1g01183 1 192433205 192433723 ECH