Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01182 ATGCGGAGATTCTACGGGTTCGAGAGCTGGATAGATAAAGACTCCGCCGAGAAACCGAAGTCGGAGAGAAAATCATCAGAAGCATGCAAGAGTCACAGGGAAGCTGAAAGAAGACGCAGACAGCGAATCAATACCCATCTCTCCACTCTTCGTTCTCTCCTCCCTAACACCGCCAAGTCGGATAAGGCGTCGTTGCTAGCGGAAGTGGTGCAGCATGTGAAACGGTTACGAAAAGGAGCTGATGACGTGGCGAATCGTTGGAATGATGAATCGTCTTCGCCGTGTAGTGGAGAACCGGGTTCGGTTGTTTCTTCTGAGGAAGCTGAGTTGTGGCCGTTTCCGGGGGAATCGGACGAGGCGACGGTGGGTTATTGCGGCGGGGAGGGAGGGGGAGTTCGGAGGATGAAAGCGACGGTGTGTTGTGAGGATCGGCCTGGACTGAACCGGGATCTGGCACAGGCGATACGGTCGGTTCGGGCGAAACCGGTTCGGGCGGAGATAATGACGGTTGGGGGGAGGACGAAGAGTGTGGTGGTGGTGGAGTGGGGTAATGATGGAAGAGAGGAGAAGGAAGTTGAAGCGTTGGAGAGGGGTTTGAAGGCGGTGGTGGAGAATCGGGCTTTTGTGGATTCTGGAATGGGCCCGTTGTTGTTGGGCCGTAAACGGGCTCGTGAGAGTAGTAAGGTTGATTGTTCTTTGTTATTGAGAAATGGGAATTTGTGCTGA 726 0.5413 MRRFYGFESWIDKDSAEKPKSERKSSEACKSHREAERRRRQRINTHLSTLRSLLPNTAKSDKASLLAEVVQHVKRLRKGADDVANRWNDESSSPCSGEPGSVVSSEEAELWPFPGESDEATVGYCGGEGGGVRRMKATVCCEDRPGLNRDLAQAIRSVRAKPVRAEIMTVGGRTKSVVVVEWGNDGREEKEVEALERGLKAVVENRAFVDSGMGPLLLGRKRARESSKVDCSLLLRNGNLC 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01182 241 SMART finulus 33 82 IPR011598 GO:0046983
Vifa1g01182 241 PANTHER TRANSCRIPTION FACTOR BHLH30 15 227 IPR045847 GO:0003700|GO:0006355
Vifa1g01182 241 SUPERFAMILY ACT-like 138 203 IPR045865 -
Vifa1g01182 241 Gene3D - 20 83 IPR036638 GO:0046983
Vifa1g01182 241 Pfam Helix-loop-helix DNA-binding domain 29 76 IPR011598 GO:0046983
Vifa1g01182 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 76 IPR011598 GO:0046983
Vifa1g01182 241 MobiDBLite consensus disorder prediction 15 43 - -
Vifa1g01182 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 83 IPR036638 GO:0046983
Vifa1g01182 241 MobiDBLite consensus disorder prediction 15 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01182 Vifa-Chr1 192431274 192432140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01182 5 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.233 2.14e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01182 HLH 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01182 - - psat:127118672 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01182 1 192431274 192432140 Vifa1g01182 1 192431274 192432140 ECH