Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01179 ATGGTTCAATCTGAGGAAGTACGAAAAGGACCCTGGACAGAACAAGAAGACTTCAAATTGGTGTCATTTGTTGGATTATTTGGCGACAGAAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACTGGTAAGAGTTGTAGATTAAGATGGGTTAATTATCTTCATCCTGGTCTCAAACGTGGTAAAATGACTCCTCATGAAGAACGTCTTGTCCTTGACCTTCAATCCAAATGGGGAAATAGGTGGTCGAGAATTGCTCAAAAGTTACCTGGTCGAACGGATAATGAGATAAAGAATTACTGGAGAACTCACATGAGGAAGAAAGCTCAGGACAAAAAGAAAATCTCATCAACTCCTTCTATAGACCATCATGTTTCAAAAGATGCAGAAGAAACAAGTTTTTATGACACAGGAGGATCAACAATATCAAAACAAGTTAAACAAGTAGGAGTAGGAGGAGATCATGAACAAGAGGAGATTTCAATGGATGATATATGGAAAGATATTGATATATCAGAAGAGAATAGTGCTCTTGAGAATGAAGAATTTTGCAATGATAATGATAAAAATAACATATCATGTTCTCTACCACTGAGTTCTTCATCATGGGAGTATAATTCCTCAAACTCACTATGGGTGATGGATGAAGAAAGCATGTTATTCCCCAAGAGTGATGACCATTATTTTTCTTACTATGCTAATTACTAA 714 0.3641 MVQSEEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLDLQSKWGNRWSRIAQKLPGRTDNEIKNYWRTHMRKKAQDKKKISSTPSIDHHVSKDAEETSFYDTGGSTISKQVKQVGVGGDHEQEEISMDDIWKDIDISEENSALENEEFCNDNDKNNISCSLPLSSSSWEYNSSNSLWVMDEESMLFPKSDDHYFSYYANY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01179 237 MobiDBLite consensus disorder prediction 114 133 - -
Vifa1g01179 237 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vifa1g01179 237 Gene3D - 64 135 - -
Vifa1g01179 237 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vifa1g01179 237 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vifa1g01179 237 FunFam Myb transcription factor 9 61 - -
Vifa1g01179 237 CDD SANT 64 107 IPR001005 -
Vifa1g01179 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vifa1g01179 237 FunFam MYB transcription factor 64 130 - -
Vifa1g01179 237 CDD SANT 11 56 IPR001005 -
Vifa1g01179 237 Gene3D - 9 61 - -
Vifa1g01179 237 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vifa1g01179 237 SMART sant 8 58 IPR001005 -
Vifa1g01179 237 SMART sant 61 109 IPR001005 -
Vifa1g01179 237 MobiDBLite consensus disorder prediction 110 138 - -
Vifa1g01179 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Vifa1g01179 237 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vifa1g01179 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 174 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01179 Vifa-Chr1 192077903 192078902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01179 1 229 MYB Transcription Factor Family AT5G59780 58.921 8.60e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g01179 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01179 K09422 - vvi:100260318 270.396