Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01177 ATGCAGAACGCAACTCGATTAGAAGCTGAACGGTTACTCGGAATCTCAGAGAAGCTATTACAGAACCGAGATCTAATGGGTTCTAAAGAATTCGCAATCTTAGCACAAGAAACCGAACCTCTTTTTGAAGGCTCCGATCAGATCTTAGCCATCGTCGACGTTCTCATCGCCTCCGAGAAACGCATCAACAACAACCCTGACTGGTACTCCATCCTCCAAATTGACCGCCGATCCGACGACGGCGACCTCATCAAAAGACAGTACCGCCGTCTCGCTCTTCTTCTGCATCCGGATAAAAGCCGGTTCCATTTCGCCGATCATGCTTTCAAGCTTGTTGCTGATGCTTGGGCGGTTCTCTCCGATCCAATCAAGAAGTCTCACTATGATAAAGAGCTTTCGTTTTTCTCTCGGGTTGATTTGTCTGTTCCCGGTTGGGTTCAGCAAGATAACGTGCCGGTGTCAGGGTCAGGGCCGGTTCGTAAAACCGGTCCTGGCCCCATCCCCGTACCGGGACCGGAAACTGGAACCCGTCAGCGAAACAGTGCTGCCGCTGCTAGAGATGGAATAGCCGCTGATGAAAACGCGCGTCGTAGGAACGCAACTTTTTGGACTGCTTGTCCTTACTGTTACCGTTTGTACGAGTTTCCTAGGGTTTATGAGGGTTTCTGTTTGAAATGTCCTAATTGTGAAAGATCTTTTCACGGTGTTAATATTCCGTCTCTGCCGCCGTTAGTTCCGGGGCAAGACGCTTATTATTGTTGCTGGGGTTTTTTCCCGATGGGTTTTGTGCTTGGGAATGTTGGTTCAGAGGAAAAAGAGACTGAGCTGGCTCCTGAAGTTGTGCCGGAGCCGGAGACTGAGACGGTTCCGGTGCCAATATCGGTTCAGCCTGCTGTTCCGTATCAGCCTGCTCCAGCTTCGTATCAGCCGGCTTCATCGCTGCCGAATTGGATGCCGGCACCTGTGCCCGTGCAGAACGGTGGGAATAATGTAATGCCAGTTGCACCAATGGACGTTGTGGTTGCTACGCCTGCGAGGGTGACAACGAGATCAGCTGCTGTAACAGGTGTTGTTTCAAATGGTGTTGCTGCTAGGGGTTCGGGATCTGGTAAGAAGCGTGGAAGGCCGAGGAAGTATTATTGA 1143 0.5101 MQNATRLEAERLLGISEKLLQNRDLMGSKEFAILAQETEPLFEGSDQILAIVDVLIASEKRINNNPDWYSILQIDRRSDDGDLIKRQYRRLALLLHPDKSRFHFADHAFKLVADAWAVLSDPIKKSHYDKELSFFSRVDLSVPGWVQQDNVPVSGSGPVRKTGPGPIPVPGPETGTRQRNSAAAARDGIAADENARRRNATFWTACPYCYRLYEFPRVYEGFCLKCPNCERSFHGVNIPSLPPLVPGQDAYYCCWGFFPMGFVLGNVGSEEKETELAPEVVPEPETETVPVPISVQPAVPYQPAPASYQPASSLPNWMPAPVPVQNGGNNVMPVAPMDVVVATPARVTTRSAAVTGVVSNGVAARGSGSGKKRGRPRKYY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01177 380 Gene3D DnaJ domain 55 139 IPR036869 -
Vifa1g01177 380 SUPERFAMILY Chaperone J-domain 61 132 IPR036869 -
Vifa1g01177 380 MobiDBLite consensus disorder prediction 361 380 - -
Vifa1g01177 380 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Vifa1g01177 380 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 287 - -
Vifa1g01177 380 MobiDBLite consensus disorder prediction 152 178 - -
Vifa1g01177 380 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Vifa1g01177 380 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vifa1g01177 380 PRINTS DnaJ domain signature 88 103 IPR001623 -
Vifa1g01177 380 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vifa1g01177 380 SMART dnaj_3 66 124 IPR001623 -
Vifa1g01177 380 CDD DnaJ 67 121 IPR001623 -
Vifa1g01177 380 Pfam DnaJ domain 67 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01177 Vifa-Chr1 191747127 191748269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01177 8 262 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 41.667 1.33e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01177 - - psat:127118671 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01177 1 191747127 191748269 Vifa1g01177 1 191747127 191748269 ECH
Vifa1g01177 1 191747127 191748269 Vifa2g03509 2 1017511304 1017511981 PCT