Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01174 ATGAAGGACATAATTACAAGGTATACTCAACACTCCCAACAAAACAACAAATTGCACAAACCTCTACAATTACAGGTAGAGAAAAACATGTTAACTGAATTGCAAAAGGAACTTGCTGATAAAACCCAACAACTAAGGGGACTGAAAGGAGAAGATTTTGAAGGGTTAAACTTAGAGGGGTTACAACAATTGGAGAGAACACTTGAAACAGGACTCAAGTGCGTGATTGAGATGAAGGAAAAAAGAATTATGAATGAGATTGGTGCACTTCAGATAAAGGGTGTCAAGTTAGAAGAGGAGAACAATCATTTAAAGAATAAGATGGCTATGCTATTTAAGGGGAAAAGTCCTATCTTGGGACACTTGGATGTTACTACCATGCAGGAAAATGTCTCATGTGAGTCCATGAATAATGTATGCAACTGCAATAGTGGACCTTCTCTTGAAGATGATTCATCTGACACATCTCTTAAGTTAGGGTTGCCATTTCCTTAA 495 0.3737 MKDIITRYTQHSQQNNKLHKPLQLQVEKNMLTELQKELADKTQQLRGLKGEDFEGLNLEGLQQLERTLETGLKCVIEMKEKRIMNEIGALQIKGVKLEEENNHLKNKMAMLFKGKSPILGHLDVTTMQENVSCESMNNVCNCNSGPSLEDDSSDTSLKLGLPFP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01174 164 Coils Coil 87 107 - -
Vifa1g01174 164 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g01174 164 MobiDBLite consensus disorder prediction 145 164 - -
Vifa1g01174 164 Coils Coil 24 51 - -
Vifa1g01174 164 Pfam K-box region 24 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01174 Vifa-Chr1 191109266 191110605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01174 1 162 MADS-box Gene Family AT4G24540 46.061 3.00e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01174 - - pop:7461823 171.014