Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01173 ATGAAGGACATAATTACAAGGTATACTCAACACTCCCAACAAAATAACAAATTGCACAAACCTCTACAATTACAGGTAGAGAAAAGCATGTTAACTGAATTGCAAAAGGAACTTGCTGATAAAACCCAACAACTAAGGGGACTGATAGGAGAAGATTTTGAAGGGTTAAACTTAGAGGGGTTACAACAATTCGAGAGAATACTTGAAACAAGACTCAAGTGCGTGATTGAGATGAAGGAAAAACTAATTATGAATGAGATTGGTGCACTTCAGATAAAGGGTGTCAAGTTAGAAGAGGAGAACAATCATTTAAAGCATAAGATGGCTATGCTATTTAAGGGGAAAAGTCCTATCTTGGGATACTTGGATGTTACTACCATGCAGGAACATGTCTCATGTGAGTCCATGAATAATGTATGCAACTGCAATAGTGGACCTTCTCTTGAAGATGATTCATCTGACACATCTCTTAAGTTAGGGTAA 483 0.3706 MKDIITRYTQHSQQNNKLHKPLQLQVEKSMLTELQKELADKTQQLRGLIGEDFEGLNLEGLQQFERILETRLKCVIEMKEKLIMNEIGALQIKGVKLEEENNHLKHKMAMLFKGKSPILGYLDVTTMQEHVSCESMNNVCNCNSGPSLEDDSSDTSLKLG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01173 160 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g01173 160 Coils Coil 24 51 - -
Vifa1g01173 160 Pfam K-box region 25 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01173 Vifa-Chr1 191088942 191090061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01173 1 160 MADS-box Gene Family AT4G24540 44.172 1.00e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01173 - - pop:7486551 164.081