Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01167 ATGGATGGTGCACCTTCTATCAACCCATTCACCGTCCCATTTTTTCCCTTCTTCCCCATCATCATCATCGTCACCACCACGCTCATTCTTATCACAAACGCATATCAAGATACAAAAGAAAATACAAAAATTCCCAGTCTCGAAGACGATAATGGCGCAATCGATATGTCATTACAACCGCCAGTATCATCAGCCGACGACCCCAATCAGGTAGTGACAAAATCAGTTTCATTCAAACCTAGTGCGGGAGCAATCGTAGGTGTTCTAGCAACCACATTCTCCCTCACCTTTCTACTTCTTCTCTATATTAAACACTGCAACGGCGTTGCTGCTAGCAATGCAAATGCAGATGGAGAGAGGGATTTGCAAGAGAGGAAGAACTCTGGGATTGGACGGACGGTTGTGGATTTGTTACCCGCGTTCAAGTTTGGTTCGTTGAGAGGACAAAAACAAGGACTCGAATGTGCGGTTTGTCTCACAGGGTTTGAGGATCATGAGATACTAAGGTTGTTGCCAAAATGCAAACATGCTTTCCATATGGAATGTGTGGACACGTGGCTTGACAAACACTCCACGTGTCCGCTCTGTCGGTATAAAGTGGACCCTGACGACATAGTTCATTCTCAAGAATTATTGTTGTCGTCAGACGTCGAAAGCGGAAGAGTTATGAGTAATGTCATCAGCAATAGCAATGAGTCACGACATGAAAATGAAAGTATAGGTTCACGACGAGTTTCTTTTATGAGAGAGAGGAATAGTGAAGGGTGTTTGTTTAGTGGTCATTCAAGAAAGGTAAAGAGTGAGAGTGTTATAGGAGAACATAGGTTAGATCATCGTATAGTTTTGTCCCCTACTTGTTCTTATACTTCACATAGTGGTGTTCAACAACGGTGGAGCAATTTTGAAACAGATGATATGCTTTACTTAACAACTGATAGGATCATCAGTTGCAGTTCGTCTTCGCGTGACGGAAGGAGAAGAAGGATGAGGCGTAATCGCGGTGGTGCTGATGATGAGATGGAGAATGGTTTTGGTGGTGGTGGTGGAAGGAGGAGGAGGAGGAGTGAATGGGATTTGAGGAGTACTGTGTCGGAGATGACAGGGGTGATGAGGTTTTTGAATAGGGATAGAAGGAGGGGAAGAGAACGTCGTGGTGGTGGCGGCCGGGAAGAACAAGAGAGACAAAGGGAGGGAGTTGCTTCAAGGTGGTGGGCTTGGATTTCGAGGTCACAGCAACAATCATATAGTAGATCAACTTCTGAATGA 1266 0.4487 MDGAPSINPFTVPFFPFFPIIIIVTTTLILITNAYQDTKENTKIPSLEDDNGAIDMSLQPPVSSADDPNQVVTKSVSFKPSAGAIVGVLATTFSLTFLLLLYIKHCNGVAASNANADGERDLQERKNSGIGRTVVDLLPAFKFGSLRGQKQGLECAVCLTGFEDHEILRLLPKCKHAFHMECVDTWLDKHSTCPLCRYKVDPDDIVHSQELLLSSDVESGRVMSNVISNSNESRHENESIGSRRVSFMRERNSEGCLFSGHSRKVKSESVIGEHRLDHRIVLSPTCSYTSHSGVQQRWSNFETDDMLYLTTDRIISCSSSSRDGRRRRMRRNRGGADDEMENGFGGGGGRRRRRSEWDLRSTVSEMTGVMRFLNRDRRRGRERRGGGGREEQERQREGVASRWWAWISRSQQQSYSRSTSE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01167 421 Pfam Ring finger domain 154 197 IPR001841 -
Vifa1g01167 421 FunFam RING-H2 finger protein ATL43 130 204 - -
Vifa1g01167 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 66 416 - -
Vifa1g01167 421 MobiDBLite consensus disorder prediction 330 360 - -
Vifa1g01167 421 SUPERFAMILY RING/U-box 150 203 - -
Vifa1g01167 421 MobiDBLite consensus disorder prediction 319 400 - -
Vifa1g01167 421 MobiDBLite consensus disorder prediction 371 398 - -
Vifa1g01167 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 204 IPR013083 -
Vifa1g01167 421 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Vifa1g01167 421 CDD RING-H2_EL5-like 154 197 - -
Vifa1g01167 421 SMART ring_2 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01167 Vifa-Chr1 190324642 190325907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01167 68 415 C3H Transcription Factor Family AT2G20030 33.867 1.43e-51 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01167 K19041 - psat:127122408 513.842