Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01163 ATGTTAACAAATTTAGAGTATTTGAATCTGGATTCTTGCCAAATTGGTGATGATGGGCGTGCGAATTTGACAGAGGTTGTTCCGAAGAAAATACTTGATCTGATGAATGTTGAAGGACTTACTAGGGAAAATGTGGTAAGCCATCTGCAGGCAGTCCATCAAGATAACACGATTGTTGCTGTTGTTGCATTCGGTGGTGGTAACGATTCGTATCTTCAGATGAGCAGAATATATGGATATGCCGATTTTTTCACCTCGTCTGGATCTAGAATTTGCTAA 279 0.3978 MLTNLEYLNLDSCQIGDDGRANLTEVVPKKILDLMNVEGLTRENVVSHLQAVHQDNTIVAVVAFGGGNDSYLQMSRIYGYADFFTSSGSRIC 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01163 92 NCBIfam myb-like DNA-binding domain, SHAQKYF class 25 51 IPR006447 GO:0003677
Vifa1g01163 92 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 26 50 IPR044841 GO:0003700|GO:0006355
Vifa1g01163 92 Gene3D - 8 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01163 Vifa-Chr1 189844491 189845526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01163 23 83 Response Regulator Gene Family AT5G58080 47.887 2.81e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g01163 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01163 - K14491 psat:127085782 87.4261