Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01162 ATGTACGAACACTCTTCGCCTTTGAACCTCACCGGAGAAAATGAAGTCGGTCCCCGTCCTGATGCCGCCTCCTTAGATGTTCACCATGACATTGATTACGAAACAAACGAAGATGGCAGCGGTGACGGTGGTGCTGCCATCATGTATAACCACTGCGATGCAAACAACTCTGAGTTGCCTCTTCAACCTATTGATAATGATAATTCTGATCAGCTTTCTCTGTCTTTCCGTGGTCAAGTCTATGTCTTTGAATCTGTCACTCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATCTGAACTGCCTCAAGCGGGTACACGATATGTGGATGCCGTGCCTCAACAAACTCAGAGGGTATCAATGGAATTTCCTACTAGATACAGTCACCAACGGCGAGCAGCCTCATTAATCAGGTTCAGGCAGAAGAGGAAAGATAGATGCTTTGATAAGAAAGTTCGATATGATGTACGTCAAGAAGTTGCACTCAGGATGAAGCGAAACAAGGGTCAATTTACTTCGGATAAGGAACAAAATGAAGCCAATAGTCCCACAGACCAGGATTCCGGGTATGATGGAAGTCAATCAGAAACCTCTAGCTGCACACATTGTGGCATAAGCTCAAAATTGACTCCTATGATGCGGCGAGGGCCATCTGGTCCAAGATCGCTTTGCAACGCTTGTGGTCTATTCTGGGCAAATAAGGGTACTTTGAGAGAACTTTCCAGGAGACATCAAGAATCATCTATTGTATCAGCCGAACAGGTTGATCAACATAATATCTCAGACTATGGAACAGCATCTGTCCCCACACATAACAATCTTGCCGTTTTCTGTGGTAATGATAACCAAGCTTTGGCAGCTGATCGTTGA 876 0.4521 MYEHSSPLNLTGENEVGPRPDAASLDVHHDIDYETNEDGSGDGGAAIMYNHCDANNSELPLQPIDNDNSDQLSLSFRGQVYVFESVTPDKVQAVLLLLGGSELPQAGTRYVDAVPQQTQRVSMEFPTRYSHQRRAASLIRFRQKRKDRCFDKKVRYDVRQEVALRMKRNKGQFTSDKEQNEANSPTDQDSGYDGSQSETSSCTHCGISSKLTPMMRRGPSGPRSLCNACGLFWANKGTLRELSRRHQESSIVSAEQVDQHNISDYGTASVPTHNNLAVFCGNDNQALAADR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01162 291 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Vifa1g01162 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 247 - -
Vifa1g01162 291 CDD ZnF_GATA 201 245 IPR000679 GO:0006355|GO:0043565
Vifa1g01162 291 MobiDBLite consensus disorder prediction 176 208 - -
Vifa1g01162 291 ProSiteProfiles GATA-type zinc finger domain profile. 196 255 IPR000679 GO:0006355|GO:0043565
Vifa1g01162 291 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Vifa1g01162 291 MobiDBLite consensus disorder prediction 169 219 - -
Vifa1g01162 291 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Vifa1g01162 291 SMART tify_2 65 100 IPR010399 -
Vifa1g01162 291 Gene3D - 192 253 IPR013088 GO:0006355|GO:0008270
Vifa1g01162 291 PANTHER GATA TRANSCRIPTION FACTOR 28 28 261 IPR045280 GO:0006355
Vifa1g01162 291 Pfam tify domain 68 99 IPR010399 -
Vifa1g01162 291 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g01162 291 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Vifa1g01162 291 Pfam GATA zinc finger 202 238 IPR000679 GO:0006355|GO:0043565
Vifa1g01162 291 Pfam CCT motif 134 176 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01162 Vifa-Chr1 189838109 189841765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01162 67 290 Tify Gene Family AT4G24470 52.301 6.14e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g01162 CCT 6.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01162 - - pvu:PHAVU_008G182900g 332.413