Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01161 ATGTACGAACACTCTTCGCCTTTGAACCTCACCGGAGAAAATGAAGTCGGTCCCCGTCCTGATGCCGCCTCCTTAGATGTTCACCATGACATTGATTACGAAACAAACGAAGATGGCAGCGGTGACGGTGGTGCTGCCATCATGTATAACCACTGCGATGCAAACAACTCTGAGTTGCCTCTTCAACCTATTGATAATGATAATTCTGATCAGCTTTCTCTGTCTTTCCGTGGTCAAGTCTATGTCTTTGAATCTGTCACTCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATCTGAACTGCCTCAAGCGGGTACACGATATGTGGATGCCGTGCCTCAACAAACTCAGAGGGTATCAATGGAATTTCCTACTAGATACAGTCACCAACGGCGAGCAGCCTCATTAATCAGGTTCAGGCAGAAGAGGAAAGATAGATGCTTTGATAAGAAAGTTCGATATGATGTACGTCAAGAAGTTGCACTCAGGATGAAGCGAAACAAGGGTCAATTTACTTCGGATAAGGAACAAAATGAAGCCAATAGTCCCACAGACCAGGATTCCGGGTATGATGGAAGTCAATCAGAAACCTCCTGCACACATTGTGGCATAAGCTCAAAATTGACTCCTATGATGCGGCGAGGGCCATCTGGTCCAAGATCGCTTTGCAACGCTTGTGGTCTATTCTGGGCAAATAAGGGTACTTTGAGAGAACTTTCCAGGAGACATCAAGAATCATCTATTGTATCAGCCGAACAGGTTGATCAACATAATATCTCAGACTATGGAACAGCATCTGTCCCCACACATAACAATCTTGCCGTTTTCTGTGGTAATGATAACCAAGCTTTGGCAGCTGATCGTTGA 873 0.4525 MYEHSSPLNLTGENEVGPRPDAASLDVHHDIDYETNEDGSGDGGAAIMYNHCDANNSELPLQPIDNDNSDQLSLSFRGQVYVFESVTPDKVQAVLLLLGGSELPQAGTRYVDAVPQQTQRVSMEFPTRYSHQRRAASLIRFRQKRKDRCFDKKVRYDVRQEVALRMKRNKGQFTSDKEQNEANSPTDQDSGYDGSQSETSCTHCGISSKLTPMMRRGPSGPRSLCNACGLFWANKGTLRELSRRHQESSIVSAEQVDQHNISDYGTASVPTHNNLAVFCGNDNQALAADR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01161 290 MobiDBLite consensus disorder prediction 176 201 - -
Vifa1g01161 290 ProSiteProfiles GATA-type zinc finger domain profile. 195 254 IPR000679 GO:0006355|GO:0043565
Vifa1g01161 290 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Vifa1g01161 290 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Vifa1g01161 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 246 - -
Vifa1g01161 290 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Vifa1g01161 290 SMART tify_2 65 100 IPR010399 -
Vifa1g01161 290 CDD ZnF_GATA 200 244 IPR000679 GO:0006355|GO:0043565
Vifa1g01161 290 Coils Coil 283 290 - -
Vifa1g01161 290 PANTHER GATA TRANSCRIPTION FACTOR 28 28 260 IPR045280 GO:0006355
Vifa1g01161 290 Gene3D - 193 252 IPR013088 GO:0006355|GO:0008270
Vifa1g01161 290 Pfam tify domain 68 99 IPR010399 -
Vifa1g01161 290 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g01161 290 MobiDBLite consensus disorder prediction 169 201 - -
Vifa1g01161 290 Pfam CCT motif 134 176 IPR010402 GO:0005515
Vifa1g01161 290 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Vifa1g01161 290 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01161 Vifa-Chr1 189838109 189841765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01161 67 289 Tify Gene Family AT4G24470 52.521 1.15e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g01161 CCT 6.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01161 - - pvu:PHAVU_008G182900g 337.035