Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01154 ATGCCTCACAGAGCAACTTACTTTTTTCCTAGGCAATTTCCCGAGAAAAGATTGGATGAATCTTCAAACAACATTTTAGATCACGAGAAGAAAAAACTCCCACTCAATTCAACTGATGCATCTTTTTTCATTGAAAATGACATTGTTACTTCTACAACTTCTGCTTCTCCGGCTAAAAACTCTGCTGTTTCTCATCTTCTTAGTACCCGCGATAAGGTCCGATGCGAACAGAAGCAGATTGCTGCGTTTTGTGATTGGTTGGTTGATAAACGACATACTCATCATGCTCGTCACCATCACCGCCGCCATCATCATCATCATCATCACCGATCGGATCAATGTCTACCTGAAGATGAGCCTCTACTTCCGGATTTGCATGCGGAAAAGGATGCTGCTGCTGTTGATAGGGAGGTTTCGCTTCCGAGATTGTCGAGTGGAAGCAGTTACACTGCCAGTTTGTTTGCTTCCGATGTTACCGTTACTGCTACATTCTCCAGTGATGATATTGCGAGAGAAGATACTACGTCATCGTTTCGTGTTTCGACCAATGAAGCTACGAGAACGAACGAACAGCATCAACAAAAGGAGGAAGAGGAACAACGTGATGAAGAAGAGAAATGCGGCGAAGAGAACTATGCTAACAAGTATAAAGAAAACTATGAACTGCAACATGCTTTGGCGAAGAGGCTGTCTTTCTTATCAAGCTTTGGTTCTGAACCGGTCCTCACTTTCGATACTGGATTAGAAACTTGGGACGTTGAATCCGTTTCTCGTCGTTTATGGGTGACAGGGTGTTTGTCTTACACCGACAAGATTTCGGATGGATTTTATAACATATTGGGGATGAATCCGTATTTGTGGTTGATGTGTAATGATATGGAGGAAGAAGGGAATTTCCTTCCTACATTGATGGCGCTTAGAGCGGTTGAACCCAATGAGAGTTCATTGGAAGTGATTCTTATTGATAGACGAGAGGATTCTCGTCTTAAGGTACTTCAAGATAAAGCTCAAGAGCTGTATTCTGCTTCTGAGAATACCTTGATGCTCGTTGAAAAGCTCGGGAAACTTGTTGCTATCTTTATGGGGGGCACCTTCCCTATGGAGCAAGGGGATATGCAAAGGAGGTGGCAGATGGTCAGTAAGAGGTTGAGGAATTTTCATCAGTGTGTTGTGCTTCCCATTGGTAGTTTGTCTACGGGAATCTGTAGGCATCGAGCAATTCTCTTCAAGAGATTGGCAGATTATATAGGTTTGCCATGCCGCATTGCTCGAGGTTGCAGGTACTGTGCATCGGATCATCAGTCGTCTATTCTTGTCAAGATTAAAGATGACAGACAACTGTCAAGGGAGTATGTTGTTGACCTGGTTGGGGAACCAGGAAATATTCTTGGGCCAGATTCATCAATTAATGGAGCATATGTATCTTCCACGCCTTCCCCATTTCAAATTTCTCATTTGAGAAAATCTCAATCGCCCTATGTGGATGGTGCAGCATCTCCTCAAGTTATAGGTTTTAATCAGATTTCTCCCGACAATCACCTGTATTCAGGCCGTTTACAGGAAGAACAGCCAAGTAAAGAAACTGATTTGCTGAAAAAGAATAATGGCTTCATTTATGCTTCTTCAGTCGATCAAACTTGTGGAGGTGCTTCTGAAGCTCTTCGCCCAGCCTCTGAAGCATTATTACACGAAGTTCCATTTGTTGGTAAAGATTCAGTCGTAGTCCAAGAAATTTCTTATAATGAGATCATTGCAAAGGGAAGTTTGGTGGTAAATGCCATCCAGTCAAAGCAGCAACTGGTAGAAAGTAGACAGGGTGCCGGTGATATTCCAAAATATGTAAATCTTGAACCATCACTAGCAATGGACTGGCTGGAGATATCATGGGATGAGCTACGGATCAAAGAGCGCGTTGGTGCTGGATCATTTGGGACAGTGTACCGTGGTGAATGGCATGGATCAGATGTTGCTGTCAAAGTTTTATCAGTTCAGAATTTTCATGATGATCAGTTGAAAGAGTTTTTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTTCTCTTCATGGGAGCGGTTACAAAGCGCCCCCATTTATCTATAGTGACAGAGTATTTGCCTAGAGGTAGTTTATTCCGCCTGATACATAGACCAGTGTCGAATGAAATTCAGGATCCAAAGAGAAGATTACGGATGGCTATAGATGTGGCTAAAGGGATCAATTATCTCCACTGTCTGAAGCCTGCAATTGTGCACTGGGATCTCAAATCCCCAAACCTGTTAGTGGACAAAAATTGGAATGTAAAGGTGTGTGATTTTGGGCTGTCTAGATTTAAGGCGAACACTTTCTTGTCATCAAAATCTGTTGCAGGAACGCCTGAGTGGATGGCTCCAGAATTTCTTCGAGGAGAACCTACAAACGAGAAGTCTGATGTATACAGTTTTGGAGTTATCCTGTGGGAACTCGTGACCTTACAACAGCCATGGGATGGACTTAGCCATGCTCAGGTGGTTGGAGCTGTGGCATTCCAGAATAGGAGACCTTCTATCCCTCCAAATATCTCTCCAGTGTTAGCCTCCCTAATGGAATCTTGTTGGGCGGATAACCCTGCTGATCGCCCATCTTTTGCAAGCATAGTTGAGACGCTAAAGAAGCTTCTAAAATCACCTGCAGATGCGATAAAAATGAGTCGAACGTTAGAAGCATGCCGCCCATCATAA 2730 0.4333 MPHRATYFFPRQFPEKRLDESSNNILDHEKKKLPLNSTDASFFIENDIVTSTTSASPAKNSAVSHLLSTRDKVRCEQKQIAAFCDWLVDKRHTHHARHHHRRHHHHHHHRSDQCLPEDEPLLPDLHAEKDAAAVDREVSLPRLSSGSSYTASLFASDVTVTATFSSDDIAREDTTSSFRVSTNEATRTNEQHQQKEEEEQRDEEEKCGEENYANKYKENYELQHALAKRLSFLSSFGSEPVLTFDTGLETWDVESVSRRLWVTGCLSYTDKISDGFYNILGMNPYLWLMCNDMEEEGNFLPTLMALRAVEPNESSLEVILIDRREDSRLKVLQDKAQELYSASENTLMLVEKLGKLVAIFMGGTFPMEQGDMQRRWQMVSKRLRNFHQCVVLPIGSLSTGICRHRAILFKRLADYIGLPCRIARGCRYCASDHQSSILVKIKDDRQLSREYVVDLVGEPGNILGPDSSINGAYVSSTPSPFQISHLRKSQSPYVDGAASPQVIGFNQISPDNHLYSGRLQEEQPSKETDLLKKNNGFIYASSVDQTCGGASEALRPASEALLHEVPFVGKDSVVVQEISYNEIIAKGSLVVNAIQSKQQLVESRQGAGDIPKYVNLEPSLAMDWLEISWDELRIKERVGAGSFGTVYRGEWHGSDVAVKVLSVQNFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHRPVSNEIQDPKRRLRMAIDVAKGINYLHCLKPAIVHWDLKSPNLLVDKNWNVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPTNEKSDVYSFGVILWELVTLQQPWDGLSHAQVVGAVAFQNRRPSIPPNISPVLASLMESCWADNPADRPSFASIVETLKKLLKSPADAIKMSRTLEACRPS 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01154 909 SUPERFAMILY Protein kinase-like (PK-like) 609 886 IPR011009 -
Vifa1g01154 909 CDD STKc_MAP3K-like 638 886 - -
Vifa1g01154 909 FunFam Serine/threonine-protein kinase CTR1 711 896 - -
Vifa1g01154 909 MobiDBLite consensus disorder prediction 173 208 - -
Vifa1g01154 909 Coils Coil 182 205 - -
Vifa1g01154 909 MobiDBLite consensus disorder prediction 173 188 - -
Vifa1g01154 909 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 178 891 - -
Vifa1g01154 909 ProSiteProfiles Protein kinase domain profile. 632 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01154 909 FunFam Serine/threonine-protein kinase isoform 1 622 710 - -
Vifa1g01154 909 SMART serkin_6 632 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01154 909 ProSitePatterns Protein kinases ATP-binding region signature. 638 659 IPR017441 GO:0005524
Vifa1g01154 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 753 765 IPR008271 GO:0004672|GO:0006468
Vifa1g01154 909 MobiDBLite consensus disorder prediction 97 120 - -
Vifa1g01154 909 Gene3D Transferase(Phosphotransferase) domain 1 711 899 - -
Vifa1g01154 909 Gene3D Phosphorylase Kinase; domain 1 625 709 - -
Vifa1g01154 909 Pfam Protein tyrosine and serine/threonine kinase 632 886 IPR001245 GO:0004672|GO:0006468
Vifa1g01154 909 MobiDBLite consensus disorder prediction 189 208 - -
Vifa1g01154 909 Pfam Ethylene-responsive protein kinase Le-CTR1 253 462 - -
Vifa1g01154 909 PRINTS Tyrosine kinase catalytic domain signature 747 765 IPR001245 GO:0004672|GO:0006468
Vifa1g01154 909 PRINTS Tyrosine kinase catalytic domain signature 813 835 IPR001245 GO:0004672|GO:0006468
Vifa1g01154 909 PRINTS Tyrosine kinase catalytic domain signature 706 719 IPR001245 GO:0004672|GO:0006468
Vifa1g01154 909 PRINTS Tyrosine kinase catalytic domain signature 857 879 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01154 Vifa-Chr1 189401747 189406974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01154 1 899 MAP Kinase Kinase Kinase AT4G24480 54.037 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa1g01154 PK_Tyr_Ser-Thr 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01154 - - gmx:100786546 1207.97