Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01151 ATGGCCGAACACCAAAACAAGATGTGTCTTTTCACCGCAACCAACAACGGTTTTTTTGACCCTGCAAAATGCGGTGTTATGAATTTCCAAGAGAAGCAAAAACTGGTCCATGAAGTTGCTTGTCAGTCCAAAGATGCCCCGGAAATACTTCAATCATTTACTCGCCGGGAACTCCTAGAATTAATCTGTGCTGAATTAGGCAAAGAAAGGAAGTACACGGGATATACTAAGGGATCTAAAAGGAAAAAAGGACCCACATCTCTGGATTCACGTAATGTTCAACTAGAGAACACGAATGAGGAAACTACAAAAACCTTAGTGTGTCGGAATGTTGCATGCAAAGCTACACTGAATCCAGAAGATTCATTTTGCAAGAGATGTTCTTGTTGTATATGTCGCTGTTACGACGATAACAAGGATCCTAGTCTGTGGTTGACCTGCACCTCTGATAAACCGAATGAAGAGTCATGTGGAATGTCGTGTCATTTGCAATGTGCTTTGAGTAATCAAATGTCTTGCATTTTGAAGGGAAGTCGTGGTGTAACCTTGGATGGAAGCTTCTGTTGTGTTTCTTGTGGGAAAATTAATGAATTAATGACGACATGGAGAAAGCAATTATTGGTTGCCAGAGAAGCAAGAAGAGTGGATATACTCTCTTTGCGAATTTCCTTGGCCCACAGAATTCTCACAGGAACAAAAGTATACACAGAAGTGCATAAGATTGTAGAAACTGCTCTCAAATTATTGGAGAATGAAGCTGGACCTCTGGATCACGTATACGCTAGGATGACACGTGGAATTGTGAGCAGGCTCTCATGTGGTGCTGAGGTTCAGAAGTTGTGCTCTTCTGCCGTTGAATGTTTTGATTTAAAGTTTTCTGAACTCTTTTCTAGTTGTGAAGAAAAGAAAGAAGTACCAACATGCTCTTTACATTTTGAAGAGTGTCTTCCCACCTCAGTGGTCATTGTGCTTGAATACAAAGACAAACTCTTAAAGAACTTTCTAGGCTGCAGGCTTTGGCACAGAATATCATCAATGGACTACCCAGAACAACCGACTTTCATTGTTTTGAGGCCGGAGAAAAGATTCAAGTTAGAAAACCTCACACCTGCAACCGAGTACTCTTGCAAGGCTTCTATATTCAGCAGCACGGGGATTTTGGGTGCAGCAGAAGCTAAATGGGTGACACCTTGTGAACAGCCATCAAAATTTATTCGACAAATTGGAAACCATTCAACTATGAACAACAAATATTCACAAGACCAAATTAAGATGGCTTCTGAAAAACCTGCACTTTTAAACATCAGGGACAGGTTTGAAGAGTTTCTGACAAAGCCTTCAACAATAGACCCTTTTTCGTGTAAGAGTTTTGTAGCAGTTCCACCTGCGACGCCTTCTAAACCGAATGAAATGAGACAAATTACTGGTTTGAGTTCTAGAAAGCGCATGAAGGAGAACGATTATGAGTACTCTGTGAGGGTAGTGAAGTGGTTGGAGCATCAAGGGCACATAGATGAAATATTTAGAGTGAAGTTTCTCACTTGGTTTAGTCTCAAGGCTAATCAGCAAGAGAGAAGGGTGGTTAGTGCTTTTGTTGATGCACTGATTGACGACCCTGCAAGCTTAGCAGACCAGCTAATACACACTTTCACCGACGAAATTTGTTGTGAGCATAAATCTTAG 1683 0.4118 MAEHQNKMCLFTATNNGFFDPAKCGVMNFQEKQKLVHEVACQSKDAPEILQSFTRRELLELICAELGKERKYTGYTKGSKRKKGPTSLDSRNVQLENTNEETTKTLVCRNVACKATLNPEDSFCKRCSCCICRCYDDNKDPSLWLTCTSDKPNEESCGMSCHLQCALSNQMSCILKGSRGVTLDGSFCCVSCGKINELMTTWRKQLLVAREARRVDILSLRISLAHRILTGTKVYTEVHKIVETALKLLENEAGPLDHVYARMTRGIVSRLSCGAEVQKLCSSAVECFDLKFSELFSSCEEKKEVPTCSLHFEECLPTSVVIVLEYKDKLLKNFLGCRLWHRISSMDYPEQPTFIVLRPEKRFKLENLTPATEYSCKASIFSSTGILGAAEAKWVTPCEQPSKFIRQIGNHSTMNNKYSQDQIKMASEKPALLNIRDRFEEFLTKPSTIDPFSCKSFVAVPPATPSKPNEMRQITGLSSRKRMKENDYEYSVRVVKWLEHQGHIDEIFRVKFLTWFSLKANQQERRVVSAFVDALIDDPASLADQLIHTFTDEICCEHKS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01151 560 PANTHER VIN3-LIKE PROTEIN 2-RELATED 19 77 IPR044514 GO:0010048|GO:0040029
Vifa1g01151 560 Pfam PHD - plant homeodomain finger protein 108 227 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01151 Vifa-Chr1 188952663 188956919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01151 15 554 PHD Gene Family AT5G57380 33.445 1.27e-93 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01151 - - gmx:100785502 838.95