Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01150 ATGGCCGAACACCAAAACAAGATGTGTCTTTTCACCGCAACCAACAACGGTTTTTTTGACCCTGCAAAATGCGGTGTTATGAATTTCCAAGAGAAGCAAAAACTGGTCCATGAAGTTGCTTGTCAGTCCAAAGATGCCCCGGAAATACTTCAATCATTTACTCGCCGGGAACTCCTAGAATTAATCTGTGCTGAATTAGGCAAAGAAAGGAAGTACACGGGATATACTAAGGGTCAGATGATAGAATATCTTCTGAAATTAATTTCTAAGAAATCCAACTTGTACATCGACCATAATGCTCCTGCTCATTCTCCTGCCAAAAGTTTCGTAGGATCTAAAAGGAAAAAAGGACCCACATCTCTGGATTCACGTAATGTTCAACTAGAGAACACGAATGAGGAAACTACAAAAACCTTAGTGTGTCGGAATGTTGCATGCAAAGCTACACTGAATCCAGAAGATTCATTTTGCAAGAGATGTTCTTGTTGTATATGTCGCTGTTACGACGATAACAAGGATCCTAGTCTGTGGTTGACCTGCACCTCTGATAAACCGAATGAAGAGTCATGTGGAATGTCGTGTCATTTGCAATGTGCTTTGAGTAATCAAATGTCTTGCATTTTGAAGGGAAGTCGTGGTGTAACCTTGGATGGAAGCTTCTGTTGTGTTTCTTGTGGGAAAATTAATGAATTAATGACGACATGGAGAAAGCAATTATTGGTTGCCAGAGAAGCAAGAAGAGTGGATATACTCTCTTTGCGAATTTCCTTGGCCCACAGAATTCTCACAGGAACAAAAGTATACACAGAAGTGCATAAGATTGTAGAAACTGCTCTCAAATTATTGGAGAATGAAGCTGGACCTCTGGATCACGTATACGCTAGGATGACACGTGGAATTGTGAGCAGGCTCTCATGTGGTGCTGAGGTTCAGAAGTTGTGCTCTTCTGCCGTTGAATGTTTTGATTTAAAGTTTTCTGAACTCTTTTCTAGTTGTGAAGAAAAGAAAGAAGTACCAACATGCTCTTTACATTTTGAAGAGTGTCTTCCCACCTCAGTGGTCATTGTGCTTGAATACAAAGACAAACTCTTAAAGAACTTTCTAGGCTGCAGGCTTTGGCACAGAATATCATCAATGGACTACCCAGAACAACCGACTTTCATTGTTTTGAGGCCGGAGAAAAGATTCAAGTTAGAAAACCTCACACCTGCAACCGAGTACTCTTGCAAGGCTTCTATATTCAGCAGCACGGGGATTTTGGGTGCAGCAGAAGCTAAATGGGTGACACCTTGTGAACAGCCATCAAAATTTATTCGACAAATTGGAAACCATTCAACTATGAACAACAAATATTCACAAGACCAAATTAAGATGGCTTCTGAAAAACCTGCACTTTTAAACATCAGGGACAGGTTTGAAGAGTTTCTGACAAAGCCTTCAACAATAGACCCTTTTTCGTGTAAGAGTTTTGTAGCAGTTCCACCTGCGACGCCTTCTAAACCGAATGAAATGAGACAAATTACTGGTTTGAGTTCTAGAAAGCGCATGAAGGAGAACGATTATGAGTACTCTGTGAGGGTAGTGAAGTGGTTGGAGCATCAAGGGCACATAGATGAAATATTTAGAGTGAAGTTTCTCACTTGGTTTAGTCTCAAGGCTAATCAGCAAGAGAGAAGGGTGGTTAGTGCTTTTGTTGATGCACTGATTGACGACCCTGCAAGCTTAGCAGACCAGCTAATACACACTTTCACCGACGAAATTTGTTGTGAGCATAAATCTTAG 1782 0.4091 MAEHQNKMCLFTATNNGFFDPAKCGVMNFQEKQKLVHEVACQSKDAPEILQSFTRRELLELICAELGKERKYTGYTKGQMIEYLLKLISKKSNLYIDHNAPAHSPAKSFVGSKRKKGPTSLDSRNVQLENTNEETTKTLVCRNVACKATLNPEDSFCKRCSCCICRCYDDNKDPSLWLTCTSDKPNEESCGMSCHLQCALSNQMSCILKGSRGVTLDGSFCCVSCGKINELMTTWRKQLLVAREARRVDILSLRISLAHRILTGTKVYTEVHKIVETALKLLENEAGPLDHVYARMTRGIVSRLSCGAEVQKLCSSAVECFDLKFSELFSSCEEKKEVPTCSLHFEECLPTSVVIVLEYKDKLLKNFLGCRLWHRISSMDYPEQPTFIVLRPEKRFKLENLTPATEYSCKASIFSSTGILGAAEAKWVTPCEQPSKFIRQIGNHSTMNNKYSQDQIKMASEKPALLNIRDRFEEFLTKPSTIDPFSCKSFVAVPPATPSKPNEMRQITGLSSRKRMKENDYEYSVRVVKWLEHQGHIDEIFRVKFLTWFSLKANQQERRVVSAFVDALIDDPASLADQLIHTFTDEICCEHKS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01150 593 PANTHER VIN3-LIKE PROTEIN 2-RELATED 19 450 IPR044514 GO:0010048|GO:0040029
Vifa1g01150 593 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01150 Vifa-Chr1 188952663 188956919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01150 15 587 PHD Gene Family AT5G57380 33.119 5.95e-96 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01150 - - gmx:100785502 895.575