Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01149 ATGGAGAGAAAACGTTCTTTTTCCACGTTGAATAACAACAACAGCTTCCAAAAGACGTTGCAAAACAAGAACAAACCTTCTTTCACCAAAGAAGATTCTGCAATTCTCCTGAAAAAGTATGACGCAAGGACGGTGTTGACGCTGTTGCAGGAAGTGGCGAGTAATGCAGGATGGAAGATTAACTGGAAGGAATTGGTGAAGAAAAGTTCGACCGGTATTTCGAGTGTGAAAGAGTATCGAATTCTGTGGCGCCATTTGGCGTATGCAAATTCATTGGTTGATCATGATTTTCAAGATCTGGATGATGATAGTGATTTGGAATGTGAGCGGAAATCATTCCCACCTATATCCAAGCAAAATGAATCCCAAGCTACAGCATGTGTCCAGGTAATGATTGAATCTATTGCAATGACTAAATCAGCAGCAACGAGCTCAACAATTGAAGCACCATTGCCTATAAAAGTTGCTTCATCTAATTTAACACAAGAGACAAGCATTAATTTCCCAGTTCTTGTGGATAGACAAACAAGGGTAAATAATGATACAAATGCATCATCATCAAATAAAAGAAAAGGAGCATGGTCAAAGGAAGAGGACATAGAATTACAAGCTGCTGTTCAGAAATGGGGTGAAGGGAATTGGACAGAAATGGCTGCAAGAGATGATTTTACTCTTAATAGAACTGCTGCACAGTTGTCTAAGAGGTGGAGAATTTTAAAAAATAAACCATTTCAAGAAGCTCAGAATTCGTCACTGATGTATCGAATGCGTGAACATATGGATTATTGA 789 0.3878 MERKRSFSTLNNNNSFQKTLQNKNKPSFTKEDSAILLKKYDARTVLTLLQEVASNAGWKINWKELVKKSSTGISSVKEYRILWRHLAYANSLVDHDFQDLDDDSDLECERKSFPPISKQNESQATACVQVMIESIAMTKSAATSSTIEAPLPIKVASSNLTQETSINFPVLVDRQTRVNNDTNASSSNKRKGAWSKEEDIELQAAVQKWGEGNWTEMAARDDFTLNRTAAQLSKRWRILKNKPFQEAQNSSLMYRMREHMDY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01149 262 SMART sant 190 242 IPR001005 -
Vifa1g01149 262 Gene3D - 182 243 - -
Vifa1g01149 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 244 IPR017930 -
Vifa1g01149 262 SUPERFAMILY Homeodomain-like 188 258 IPR009057 -
Vifa1g01149 262 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 21 243 - -
Vifa1g01149 262 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g01149 262 ProSiteProfiles Myb-like domain profile. 186 240 IPR001005 -
Vifa1g01149 262 MobiDBLite consensus disorder prediction 7 25 - -
Vifa1g01149 262 CDD SANT_TRF 194 241 - -
Vifa1g01149 262 Pfam Myb-like DNA-binding domain 191 237 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01149 Vifa-Chr1 188351096 188352617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01149 184 236 MYB Transcription Factor Family AT1G56650 41.509 3.79e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g01149 Myb_DNA-binding 8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01149 - - psat:127121262 391.349