Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01130 ATGTCCTCACAAGCAGTGCAGTTGTATATAGAAAAAAATCAAGTGGTTATGAACAATGGTATAGTGAAAGTGTTTTTCTCAAATCCTGGTGGATTTGTGACTAGAATACAATATAATGGCATTGATAATATGCTTGAAGATCTTAATGAAATGAATAATAGAGGGTATTGGGATGTTGTTTGGAGTGAAGCAGGAACTACAGGAACACTTGGGACATTTGAGAAGGTTGTAGGAACAAGTTATAATGTTATAATAGAAACAGATGAACAAGTTGAAATCTCATTTACTAGGATATGGGATCCATCTCTAAAGGGGAAGCAATCCCCTCTAAATATAGACAAAAGGTATGTGATGCTACGAAATTCATCAGGATTCTACTCTTATGCTATATTTGAACACTTAAAAGAGTGGCCAGCTTTCAACATACCTCAAATAAGAATTGTTTACAAGCTTGGTAAAGACAAGTTTCATTACATGGCTGTGGGGAATGATAGACAAAGGTTTATGCCTCTACCTGATGATCGATTACCTGAAAGAGGACAAGAACTTGTTCCTCCAGAAGCTGTTTTGCTTGTTAATCCTGTGGAGCCAGAGTTTAAAGGAGAGGTAGATGACAAGTACCAATACTCAAGTGAAAATAAAGACCTTAAGGTGGCCTTATCAAACAAAATCTCACCTCTCATGTGGGCCCTATCAGTCTTGCATGCTCATTATGCAGGAGAGGATATAGTTCTTAAACTCCAGCCCAATGAGCCATGGAAAAAAGTTTTTGGGCCAACTTTTGTCTATCTTAATACCTTTTTAGATCATCATGAGGATTCACTAGAGCTATGGGAGGATGCCAAGTATCAGATGAACAAGGAAGTGCAAAGTTGGCCTTATGATTTTCCAGCTTCAATTGATTTTCAAAAGTCTAGCGAACGAGGAACTATTAATGGCACATTACTAGTTCGTGATAGGTTTGTAAATGATAAGGACATAATAGCACAAGGTGCGTACATAGGTTTGGCACCACCGGGGGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGTGTAGAGCAAACGACAATGGATACTTTTCAATAGAAAATATACGAAGTGGAGATTACAATCTATATGCATGGGTTCCAGGTTTCATTGGAGAATATAAGAACAATATTATGATCAAAATAACTCCAGGTTGTAAAATAAACTTTGGTGACATTATTTACGAGCCTCCAAGAAATGGTCCAACATTATGGGAGATTGGAATCCCTGATCGCTCTGCAGCTGAGTTTTATATTCCATATCCTAATCCAAAATTCATAAACAAGCTTTTTATAGATCATCCAGACAAGTTCAGGCAATATGGCTTGTGGGAAAGATATGCAGAACTATATCCAAATGAAGATTTAATTTATACCGTTGGTGTTAGTAACTACACAAAAGATTGGTTTTATGCACAGGTCACAAGGAAGAAAAATAATGGTAGTTATCAAGGAACTACATGGCAAATTAAGTTTGACCTAGATGATGTGGAAGTAAATGGAATCTATAAATTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAGTTACAAATTCGAGTGAACGATGTTAAACAAGATCCTTCAATATTTACTACTGGGTTGATTGGAAAGGATTATGCAATAGGAAGACATGGCATTCATGGACTTTATTGGCTATATAATATTGATGTGCCAAGTCTTTTGTTATCCAAAGGAGATAATACTATTTTCCTAACACAGACTATGGCTTTTGGTCCTTTGGCACGCTTTCAAGGAATAATGTATGACTATATTCGTTTAGAAGGTCCTAACTCTTGTTCTTCATATTAA 1851 0.3668 MSSQAVQLYIEKNQVVMNNGIVKVFFSNPGGFVTRIQYNGIDNMLEDLNEMNNRGYWDVVWSEAGTTGTLGTFEKVVGTSYNVIIETDEQVEISFTRIWDPSLKGKQSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLGKDKFHYMAVGNDRQRFMPLPDDRLPERGQELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLKVALSNKISPLMWALSVLHAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTFLDHHEDSLELWEDAKYQMNKEVQSWPYDFPASIDFQKSSERGTINGTLLVRDRFVNDKDIIAQGAYIGLAPPGDVGSWQRECKGYQFWCRANDNGYFSIENIRSGDYNLYAWVPGFIGEYKNNIMIKITPGCKINFGDIIYEPPRNGPTLWEIGIPDRSAAEFYIPYPNPKFINKLFIDHPDKFRQYGLWERYAELYPNEDLIYTVGVSNYTKDWFYAQVTRKKNNGSYQGTTWQIKFDLDDVEVNGIYKLRLALASANVSELQIRVNDVKQDPSIFTTGLIGKDYAIGRHGIHGLYWLYNIDVPSLLLSKGDNTIFLTQTMAFGPLARFQGIMYDYIRLEGPNSCSSY 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01130 616 SUPERFAMILY Starch-binding domain-like 306 398 IPR013784 GO:0030246
Vifa1g01130 616 Pfam Polysaccharide lyase family 4, domain III 416 607 IPR029411 -
Vifa1g01130 616 Gene3D - 304 399 - -
Vifa1g01130 616 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 232 611 - -
Vifa1g01130 616 CDD RGL4_C 418 608 - -
Vifa1g01130 616 Pfam Polysaccharide lyase family 4, domain II 330 402 IPR029413 -
Vifa1g01130 616 CDD RGL4_N 11 266 - -
Vifa1g01130 616 CDD RGL4_M 307 406 IPR029413 -
Vifa1g01130 616 Gene3D - 414 608 - -
Vifa1g01130 616 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Vifa1g01130 616 Coils Coil 520 540 - -
Vifa1g01130 616 FunFam Rhamnogalacturonate lyase B 304 403 - -
Vifa1g01130 616 SUPERFAMILY Galactose-binding domain-like 413 608 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01130 Vifa-Chr1 185171835 185180328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01130 1 611 Polysaccharide Lyase AT1G09890 58.658 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01130 K18195 - gmx:100815677 1018.45