LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01127	ATGATTCAACCTCAAACCTATTTAAATGTAGCCGATAATAGTGGAGCGCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGAAGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTGCCAAATTCATCTTTAAAAAGATCTCAAGTCATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCGGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAGGTATTATAA	369	0.3442	MIQPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKAVPNSSLKRSQVIRAVIVRTCKELKRRNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIISLAPEVL	122

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01127	122	SUPERFAMILY	Ribosomal protein L14	1	122	IPR036853	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01127	122	PANTHER	50S/60S RIBOSOMAL PROTEIN L14/L23	1	121	IPR000218	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01127	122	NCBIfam	50S ribosomal protein L14	1	122	IPR005745	GO:0003735\|GO:0006412\|GO:0015934
	Vifa1g01127	122	Gene3D	Ribosomal protein L14	1	122	IPR036853	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01127	122	SMART	Ribosomal_L14_2	1	122	IPR000218	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01127	122	FunFam	50S ribosomal protein L14, chloroplastic	1	122	-	-
	Vifa1g01127	122	Hamap	50S ribosomal protein L14 [rplN].	1	122	IPR000218	GO:0003735\|GO:0005840\|GO:0006412
	Vifa1g01127	122	ProSitePatterns	Ribosomal protein L14 signature.	60	86	IPR019972	-
	Vifa1g01127	122	Pfam	Ribosomal protein L14p/L23e	1	122	IPR000218	GO:0003735\|GO:0005840\|GO:0006412

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01127	Vifa-Chr1	184730344	184730712	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01127	8	118	Cytoplasmic Ribosomal Protein Gene Family	AT3G04400	36.522	2.96e-17	70.5

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01127	K02874		-	gmx:3989333	217.624

Showing 1 to 1 of 1 entries