Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01123 ATGGTTTTCTCTTCTATTCCATCTTATTTAGATCCTCTCAATTGGCAGCAGCAACCAAATCAACATCAGTTGCTTCCACCACTATCCTCACAGCCACATGGTGCAGGCTCAATAATCAGGCCTGGTTCGATACCGAATCAAGTTCAAGGTCAAGGTCAAGCTCAGACTCAAGCTAGTCAGGGTCACGATATTCAAACAGGTCAGACTCAGACTCAGGCTCAAACTCAAACTCAGATAGTTAAACTACCACAACCAGAAACAGCTTTAAAGTGTCCTCGTTGCGAATCAAACAACACAAAATTTTGTTACTACAACAACTATAACTTATCTCAACCAAGACACTTCTGTAAGACGTGTAGGCGTTACTGGACGAGAGGGGGTGCATTGAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAGCAAAAAAACCAAAAAGAGTAACACCACTACTACTACTACTCCTTCCAAATCTTCAATATCTAATAGTAATGAAAAAGATTATTCAACAAGTGCAATCCATTCAACTTCATCTCCTTTTGGAGAATTCTTGAATCCAAGTAACAAAACCTACATGAACATGACATCTCTTCAGAATCTGAGTCGCTATGGCGTTGGAAACGTCGGTAATATGGGGTTTCAAATTGGAGATTATAGTGGAGGTGGAGAAGGTGGTGGAGTTGTTGATCAGTGGCGGTTTCAGCAATTTCCTTTCATGAATAATGGTTTTGAATCAACTATTTCAAATGTTTCTTTCCCATTCCAAAGTGAAATTGTTGAACCACAAACTTCTTCTAGGGCTAATACTCAGATGCCTGCATCGATTAAATCGGAAAACAACTTAGGTTTGAATTTCTTAAGATCTTCTCTGAATGTCTCAGAGAATAACAACAACCATTATAATTCATGGCCTGATTTTTCTGGTCTAGCATCTTCTTCCGCTAGTCGTCTGTTGTAA 957 0.3971 MVFSSIPSYLDPLNWQQQPNQHQLLPPLSSQPHGAGSIIRPGSIPNQVQGQGQAQTQASQGHDIQTGQTQTQAQTQTQIVKLPQPETALKCPRCESNNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSNTTTTTTPSKSSISNSNEKDYSTSAIHSTSSPFGEFLNPSNKTYMNMTSLQNLSRYGVGNVGNMGFQIGDYSGGGEGGGVVDQWRFQQFPFMNNGFESTISNVSFPFQSEIVEPQTSSRANTQMPASIKSENNLGLNFLRSSLNVSENNNNHYNSWPDFSGLASSSASRLL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01123 318 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Vifa1g01123 318 MobiDBLite consensus disorder prediction 147 175 - -
Vifa1g01123 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 266 IPR045174 GO:0003700|GO:0006355
Vifa1g01123 318 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677|GO:0006355
Vifa1g01123 318 MobiDBLite consensus disorder prediction 20 72 - -
Vifa1g01123 318 MobiDBLite consensus disorder prediction 42 72 - -
Vifa1g01123 318 MobiDBLite consensus disorder prediction 133 175 - -
Vifa1g01123 318 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01123 Vifa-Chr1 184551061 184552202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01123 9 303 C2C2-Dof Transcription Factor Family AT3G55370 37.188 1.73e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g01123 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01123 - - psat:127087162 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01123 1 184551061 184552202 Vifa4g02072 4 603871460 603872551 PCT