Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01120 ATGGCAATTCATTCGCTTTTCTGTTATAACAAACCAACGCGTTTCGCACCAGGTTTATTTGAATGGGGAGAGGAAAGATCCACTGAGAAACTCTACGAGTTTGCGAGTTCCAGCATGAGAACAGTAATTGATCGATACAACAAATCAAAAGAAGAACATAATCAACTTGGGAGTCCAGCCTCTGAAATTAAGTTCTGGCAAAGGGAGGCAGCAGTGTTAAGGCAGCAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGCGAAGAATTATCAGGTTTGACAGTCAAAGAACTACAGAGTTTGGAGAACCAATTGGAAATCAGTCTTCGTGGTGTTCGTGTGAAAAAGGAGCAACTTTTTATGGATGAAATACAAGAACTAAATCGACAGGGAGACATCATACACCAAGAAAATGTAGAGCTGTATCAGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTCTGTTCTCACGGTTAGTCTAGGCATAGGAGACGATTCACACGTGCCTGTGAATCTCCAGCTCAGCCAGCCGCAGCAACTACACTACCAAGCAGCTTCAGGAACTACAAAACTGGGCAGACTACAATTGCATTGA 612 0.4183 MAIHSLFCYNKPTRFAPGLFEWGEERSTEKLYEFASSSMRTVIDRYNKSKEEHNQLGSPASEIKFWQREAAVLRQQLHNLQESHRQIMGEELSGLTVKELQSLENQLEISLRGVRVKKEQLFMDEIQELNRQGDIIHQENVELYQKVYGTKDKNGTNRNSVLTVSLGIGDDSHVPVNLQLSQPQQLHYQAASGTTKLGRLQLH 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01120 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 159 - -
Vifa1g01120 203 Pfam K-box region 61 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g01120 203 Coils Coil 63 83 - -
Vifa1g01120 203 ProSiteProfiles K-box domain profile. 63 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01120 Vifa-Chr1 183275571 183308826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01120 27 188 MADS-box Gene Family AT4G37940 59.259 5.89e-60 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01120 K09264 - gmx:100812413 281.182