Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01112 ATGGTGTTGAGAAAAGTGTATGAAATTGGAAGAACAATTGGTGAAGGAACGTTCGCGAAGGTGAAGTTCGCTCAGAATACTGAAACTGGTGAAAGCGTTGCGATGAAGATTCTCGACCGTAGCACCATCATCAAGCACAAAATGGCCGATCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTCAGACATCCATATGTTGTTCGCCTCCATGAGGTTCTGGCTAGCCGTACTAAGATTTATATCATATTGGAGTTCATCACAGGTGGTGAATTGTTCGATAAGATTGTACATCATGGGCGTCTCAGTGAAGCTGAAGCTAGAAGATACTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCATAGAGATTTAAAGCCTGAAAACCTTTTACTTGATTCACTAGGAAATATGAAGATTTCAGATTTTGGTTTGAGTGCTTTGCCAGAACAAGGGGTTAGTATGCTGCGGACAACTTGTGGAACTCCTAATTATGTAGCCCCTGAGGTACTCAGTCACAAGGGCTATAATGGTGCTCCAGCAGATGTTTGGTCATGTGGCGTTATCCTCTATGTTCTAATGGCAGGATATCTTCCCTTTGATGAGCTTGATCTTACCACGCTATATAGTAAGATTGACAAAGCAGAGTTTTCATGCCCTGCTTGGTTTCCTGTGGGAGCAAAATCTTTGATACAGAGAATTTTGGACCCAAACCCTGAACATCGTATTACCATTGAGCAGATTAGAAATGACGAGTGGTTTCAAAAAAGCTACGTTCCTGTCCATCTCCTCGAGTATGAAGATGTAAATCTGGATGATGTAAATGCTGCATTTGACAGTGTTGAGGATCAGAGGGATAATCCGCAATGTGAGGTTGAGGACACAGGTCCTCTAGTTCTTAATGCATTTGACATGATAATGTTATCTCAAGGCTTAAACCTTGCATCAATCTTTGATCGAGGACAGGACACTATGAAGTACCAAACACGCTTTGTCACTCAAAAGCCAGTGAAAGTGGTTTTAACAAGTATGGAAGTTGTGGCACAATCAATGGGATTCAAGACGCATATTCGTAACTACAAGATGAGAATAGAGGGTATTTCAACAAATAAGAAATCTCATTTCTCAGTTATATTGGAAGTTTTTGAAGTTGCTCCCACATTTTTCATGGTGGATATTCAGAAAGCAGCTGGAGATGCCAGTGAATATCTCAAGTTTTACAAGAATTTCTCTAGCAATCTTGAAGATATCATCTGGAAATCGCCTTATGAAACAAGCAAATTGAAGACCCCCAAGAATAGAAGCAAAAAACAATAG 1335 0.4022 MVLRKVYEIGRTIGEGTFAKVKFAQNTETGESVAMKILDRSTIIKHKMADQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSEAEARRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNMKISDFGLSALPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGAPADVWSCGVILYVLMAGYLPFDELDLTTLYSKIDKAEFSCPAWFPVGAKSLIQRILDPNPEHRITIEQIRNDEWFQKSYVPVHLLEYEDVNLDDVNAAFDSVEDQRDNPQCEVEDTGPLVLNAFDMIMLSQGLNLASIFDRGQDTMKYQTRFVTQKPVKVVLTSMEVVAQSMGFKTHIRNYKMRIEGISTNKKSHFSVILEVFEVAPTFFMVDIQKAAGDASEYLKFYKNFSSNLEDIIWKSPYETSKLKTPKNRSKKQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01112 444 FunFam Non-specific serine/threonine protein kinase 2 86 - -
Vifa1g01112 444 SUPERFAMILY Protein kinase-like (PK-like) 7 283 IPR011009 -
Vifa1g01112 444 Gene3D Kinase associated domain 1, KA1 304 426 - -
Vifa1g01112 444 SMART serkin_6 7 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01112 444 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Vifa1g01112 444 Pfam Protein kinase domain 7 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01112 444 Gene3D Transferase(Phosphotransferase) domain 1 2 303 - -
Vifa1g01112 444 CDD CIPK_C 307 422 - -
Vifa1g01112 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 411 - -
Vifa1g01112 444 Pfam NAF domain 303 361 IPR004041 GO:0007165
Vifa1g01112 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vifa1g01112 444 FunFam Non-specific serine/threonine protein kinase 300 426 - -
Vifa1g01112 444 ProSiteProfiles Protein kinase domain profile. 7 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g01112 444 ProSitePatterns Protein kinases ATP-binding region signature. 13 45 IPR017441 GO:0005524
Vifa1g01112 444 FunFam Non-specific serine/threonine protein kinase 2 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01112 Vifa-Chr1 182075704 182081791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01112 1 386 CBL-interacting serine-threonine protein kinases AT4G24400 81.701 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa1g01112 Pkinase 2.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01112 - - gmx:100813117 783.482